Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2538 ATGTGCGGTGGTCCAGATAAATCCAATTCTACATCTACTACATCAGCAAACTCGTCTAACCCTAAAGACATGAACCAATTAACTGTTGATTGTGAGGATTCTTTTTATAGCTTACTGGAGCTTGCTTCGGACAACGATGTCGTAGGATTCAAGCTTATGACGGAGTCTGATTTTTTTTCACTCAACAAGTCTGGACTCTGGTATGTTCGCCAAAAAGGCTCTAAACAAGTTGTTCATGAGCACAGAACACCCCTGATGGTTGCTGCGACATATGGCTGTATTGATATTCTGAAAGTTATACTATCACATCCTGAGGTTGATGTTAATCTCTCGTCTTGCACTGACAAGAGCACTGCTCTCCACTGTGCTACTTCTAGTGGATCCGTGACCGCGGTTGATATTGTTGATTTGCTACTATCTGCTGGTGCTGACCCAAACACTAAGGATATTAATGGTGATCGCCCTGTGGATGTCATTTTTGTTCATCCGAAGTTGCAGAAGCAGAACACAATGTTCAAGCTCGAGGAACTTCTCAATAATCATTCGAATGGATCCATGGACGTGTCTGGTATGCATTTGTCAATCCAAACACCACTTTCCTCATCATCATTGGAAGATGAATTTCCATCTCCACCCAAGTCTATGTCTTCTCCCAAATTTATTGATGGGTTTGCAAACTCTACTAAGGAGAAGAAAGAATATCCAATTGATCCATCGCTTCCTGACATCAAGAACAGCATATATGCAACAGATGAATTTCGAATGTTTTCCTTCAAAGTGAGGCCTTGTTCTCGGGCGTATTCTCATGATTGGACCGAGTGTCCTTTTGTCCACCCGGGGGAGAATGCTCGCAGAAGAGACCCGAGGAAGTTTCACTACAGCTGTGTTCCATGCCCTGATTTCAGAAAGGGGGCTTGTAGGCGTGGGGATATGTGTGAATATGCTCATGGAGTATTTGAATGTTGGCTTCACCCAGCTCAGTATCGAACTCGTCTTTGCAAGGATGGTACGAGTTGCAATAGGCGGGTCTGTTTCTTTGCTCACATTAATGAGGAATTACGGCCATTGTATGTGTCTACTGGATCCGCTGTCCCTTCCCCACGTTCAATTGGGTCTGCCCCAACTGTAATGGATATGGCTACTGCATTGGGTCTGATGCCTGGTTCCCCTTCATCAGTGTCAGCGTTATCTCCATCCCCATTCACTCAGTCCATGTCTCCCTCTTCGAATGGCATTTCACACTCTTCTGTGAGCTGGCAGCAACCGAATGTACCAACCCTTCATCTTCCAGGAAGTAACTTGCAATCCAGCCGGTTGAGGTCATCTCTGAATGCCAGGGATATGACTCTGGAGGATTTGAATCTCATGCCAGACTTTGACAACCAGGCACGAATTTTGAACGAAATGAATTGTTTCTCTCAGCCTCGTCCTAGTGCTGTTTCTGTAAGCCGATCTGGCTGGACCCAAACTCTAACTCCTAACAATCTTGATGAGCTATTTTCTTCTGAGATCTCTTCTTCTCCCCGATTCTCTGATCCAGCTGCCAATGTCTTTTCCCCTACGCGCAAATCAACATTACTAAACCAATTCCAGCCGCAGCAGCAGAACATGTTGTCACCCATTAATACAAGGATCATGTCTCCTAAGAATGTCGATCATCCTTTCCAGCAGCAGCAGAACATGTTGCAGGCCTCTTTTGGTGTTTCATCACCTGGAAGGATGTCGCCTAGAAACACCGAGCCGCTGTCCCCAATGGGATCTAGGTTCTCTGCCTTTGTACAGCGTGAAAAGCAACAACATCTCCGCTCTCTCAGCTCAAGGGAGCTTGGAGCCAATGTCCCGAGCTCATTGATTGGTTCTCCTGTCAATTCTTTGTCCAAATGGGGGTCTCCCAATGGGAAGGTGGATTGGTCAGTTGGTAAGAATGAACTGGGTCCACTGCGAAGATCATCGTCTTTTGAGATGGGAATTAATGGGGATGATCCCGACTTATCATGGGTTCAATCCCTGGTGAAGGAATCCCCACCCGAGATGCCGAAAGAGAGGTTAGCAGCACCCAGGATTGGTGCTGCAGCATCCGGTGAGGGCCTAACTACTACTAAATCACAATTAGAGTCCACTGATCAGTCTGTAATAGGAGCTTGGCTTGATCAGTTGGTAGTTTAG 2166 46.08 MCGGPDKSNSTSTTSANSSNPKDMNQLTVDCEDSFYSLLELASDNDVVGFKLMTESDFFSLNKSGLWYVRQKGSKQVVHEHRTPLMVAATYGCIDILKVILSHPEVDVNLSSCTDKSTALHCATSSGSVTAVDIVDLLLSAGADPNTKDINGDRPVDVIFVHPKLQKQNTMFKLEELLNNHSNGSMDVSGMHLSIQTPLSSSSLEDEFPSPPKSMSSPKFIDGFANSTKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHINEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLMPGSPSSVSALSPSPFTQSMSPSSNGISHSSVSWQQPNVPTLHLPGSNLQSSRLRSSLNARDMTLEDLNLMPDFDNQARILNEMNCFSQPRPSAVSVSRSGWTQTLTPNNLDELFSSEISSSPRFSDPAANVFSPTRKSTLLNQFQPQQQNMLSPINTRIMSPKNVDHPFQQQQNMLQASFGVSSPGRMSPRNTEPLSPMGSRFSAFVQREKQQHLRSLSSRELGANVPSSLIGSPVNSLSKWGSPNGKVDWSVGKNELGPLRRSSSFEMGINGDDPDLSWVQSLVKESPPEMPKERLAAPRIGAAASGEGLTTTKSQLESTDQSVIGAWLDQLVV 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38201111 38204986 + Sed0020502.1 Sed04g2538 711141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2538 721 PANTHER UNKEMPT FAMILY MEMBER 70 675 IPR045234 -
Sed04g2538 721 PRINTS Ankyrin repeat signature 134 148 IPR002110 GO:0005515(InterPro)
Sed04g2538 721 PRINTS Ankyrin repeat signature 81 96 IPR002110 GO:0005515(InterPro)
Sed04g2538 721 ProSiteProfiles Zinc finger C3H1-type profile. 297 319 IPR000571 GO:0046872(InterPro)
Sed04g2538 721 SMART ANK_2a 115 147 IPR002110 GO:0005515(InterPro)
Sed04g2538 721 SMART ANK_2a 80 110 IPR002110 GO:0005515(InterPro)
Sed04g2538 721 MobiDBLite consensus disorder prediction 394 419 - -
Sed04g2538 721 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 296 317 IPR000571 GO:0046872(InterPro)
Sed04g2538 721 Gene3D - 292 355 - -
Sed04g2538 721 SUPERFAMILY Ankyrin repeat 79 161 IPR036770 -
Sed04g2538 721 ProSiteProfiles Ankyrin repeat profile. 115 150 IPR002110 GO:0005515(InterPro)
Sed04g2538 721 ProSiteProfiles Ankyrin repeat region circular profile. 115 149 - -
Sed04g2538 721 FunFam Zinc finger CCCH domain-containing protein 66 250 318 - -
Sed04g2538 721 Gene3D - 7 200 IPR036770 -
Sed04g2538 721 SMART c3hfinal6 292 318 IPR000571 GO:0046872(InterPro)
Sed04g2538 721 SMART c3hfinal6 327 350 IPR000571 GO:0046872(InterPro)
Sed04g2538 721 MobiDBLite consensus disorder prediction 1 25 - -
Sed04g2538 721 Pfam Ankyrin repeats (3 copies) 80 149 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0305 Sed-Chr2:39351250 Sed04g2538 Sed-Chr4:38201111 5.10E-236 dispersed
Sed04g2538 Sed-Chr4:38201111 Sed12g1226 Sed-Chr12:8602749 1.90E-238 dispersed
Sed04g2538 Sed-Chr4:38201111 Sed05g1341 Sed-Chr5:26201561 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38257 PF12796 Ank_2 7.40E-11 CL0465 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2538 - - - 0.0