Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g2541 | ATGGCGTTGGCTACTCGCCTGAGATCCACCATTCCCGTCCTCAGCAAGCTTTTGAGATCCGAATCGCCCTGCTCTCCGCTCTCAAGGACTTATGCCGCTACATCAGAGAAAAATGAAAAAAAGGTGAAGGTGCCACTTGCTTTGTTTGGAGGGTCTGGTAACTATGCCTCTGCTCTGTATATAGCTGCAGTAAAAGCTAATTCTCTTGGCAAGGTGGAGTCTGAGCTTGTTAACCTTGTCGATGCTATTAAGAAAAGTCCTACATTTGCTCAGTTCACAATGGACCTGTCAGTTCCAGCAGAAACTAGAGTTAAGGCTATCAATGAAATTTCTGCTGAAGCTAAATTTTCGGACGTTGTAAAGAACTTCTTGGTTGTTTTGGCTGAGAACGGGAGGCTGAGATATGCAGATAGCATAGCAAAGAGATTTTTGGAGTTGACTATGGCTCATAAGGGAGAACTTAAAGCAGTTGTTACTACTGTTATTCCCATTCCCCCACAAGAAGAGAAAGAATTGAAGGAGACATTGCAAGATATATTTGGACAAGGCAAGAAGGTTAAGCTCGAGCAGAAGATTGATCCCAGCATACTTGGTGGTCTAGTTGTAGAATTTGGCGAGAAAGTATTTGACATGTCTATCAAAACCCGTGCCCGTCAAATGGAGAGGTTCTTGCGCCAACCTGTTACTCTTGACTAG | 696 | 43.82 | MALATRLRSTIPVLSKLLRSESPCSPLSRTYAATSEKNEKKVKVPLALFGGSGNYASALYIAAVKANSLGKVESELVNLVDAIKKSPTFAQFTMDLSVPAETRVKAINEISAEAKFSDVVKNFLVVLAENGRLRYADSIAKRFLELTMAHKGELKAVVTTVIPIPPQEEKELKETLQDIFGQGKKVKLEQKIDPSILGGLVVEFGEKVFDMSIKTRARQMERFLRQPVTLD | 231 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 38225151 | 38229156 | - | Sed0003633.1 | Sed04g2541 | 711144 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g2541 | 231 | Pfam | ATP synthase delta (OSCP) subunit | 53 | 222 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Sed04g2541 | 231 | PRINTS | ATP synthase delta subunit signature | 132 | 146 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Sed04g2541 | 231 | PRINTS | ATP synthase delta subunit signature | 121 | 132 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Sed04g2541 | 231 | PRINTS | ATP synthase delta subunit signature | 184 | 199 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Sed04g2541 | 231 | PRINTS | ATP synthase delta subunit signature | 51 | 70 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Sed04g2541 | 231 | PRINTS | ATP synthase delta subunit signature | 199 | 217 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Sed04g2541 | 231 | Hamap | ATP synthase subunit delta [atpD]. | 47 | 226 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Sed04g2541 | 231 | Gene3D | - | 51 | 144 | IPR026015 | - | |
Sed04g2541 | 231 | PANTHER | ATP SYNTHASE DELTA CHAIN | 19 | 227 | IPR000711 | GO:0000274(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0042776(PANTHER)|GO:0045261(PANTHER)|GO:0046933(InterPro)|GO:0046933(PANTHER) | |
Sed04g2541 | 231 | NCBIfam | ATP synthase F1 subunit delta | 54 | 223 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Sed04g2541 | 231 | ProSitePatterns | ATP synthase delta (OSCP) subunit signature. | 186 | 205 | IPR020781 | GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro) | |
Sed04g2541 | 231 | SUPERFAMILY | N-terminal domain of the delta subunit of the F1F0-ATP synthase | 52 | 153 | IPR026015 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g2541 | Sed-Chr4:38225151 | Sed04g2544 | Sed-Chr4:38225151 | 4.00E-121 | dispersed | |
Sed04g2541 | Sed-Chr4:38225151 | Sed04g2542 | Sed-Chr4:38225151 | 1.70E-108 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g2541 | K02137 | - | rcu:8272168 | 328.946 |