Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2541 ATGGCGTTGGCTACTCGCCTGAGATCCACCATTCCCGTCCTCAGCAAGCTTTTGAGATCCGAATCGCCCTGCTCTCCGCTCTCAAGGACTTATGCCGCTACATCAGAGAAAAATGAAAAAAAGGTGAAGGTGCCACTTGCTTTGTTTGGAGGGTCTGGTAACTATGCCTCTGCTCTGTATATAGCTGCAGTAAAAGCTAATTCTCTTGGCAAGGTGGAGTCTGAGCTTGTTAACCTTGTCGATGCTATTAAGAAAAGTCCTACATTTGCTCAGTTCACAATGGACCTGTCAGTTCCAGCAGAAACTAGAGTTAAGGCTATCAATGAAATTTCTGCTGAAGCTAAATTTTCGGACGTTGTAAAGAACTTCTTGGTTGTTTTGGCTGAGAACGGGAGGCTGAGATATGCAGATAGCATAGCAAAGAGATTTTTGGAGTTGACTATGGCTCATAAGGGAGAACTTAAAGCAGTTGTTACTACTGTTATTCCCATTCCCCCACAAGAAGAGAAAGAATTGAAGGAGACATTGCAAGATATATTTGGACAAGGCAAGAAGGTTAAGCTCGAGCAGAAGATTGATCCCAGCATACTTGGTGGTCTAGTTGTAGAATTTGGCGAGAAAGTATTTGACATGTCTATCAAAACCCGTGCCCGTCAAATGGAGAGGTTCTTGCGCCAACCTGTTACTCTTGACTAG 696 43.82 MALATRLRSTIPVLSKLLRSESPCSPLSRTYAATSEKNEKKVKVPLALFGGSGNYASALYIAAVKANSLGKVESELVNLVDAIKKSPTFAQFTMDLSVPAETRVKAINEISAEAKFSDVVKNFLVVLAENGRLRYADSIAKRFLELTMAHKGELKAVVTTVIPIPPQEEKELKETLQDIFGQGKKVKLEQKIDPSILGGLVVEFGEKVFDMSIKTRARQMERFLRQPVTLD 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38225151 38229156 - Sed0003633.1 Sed04g2541 711144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2541 231 Pfam ATP synthase delta (OSCP) subunit 53 222 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed04g2541 231 PRINTS ATP synthase delta subunit signature 132 146 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed04g2541 231 PRINTS ATP synthase delta subunit signature 121 132 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed04g2541 231 PRINTS ATP synthase delta subunit signature 184 199 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed04g2541 231 PRINTS ATP synthase delta subunit signature 51 70 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed04g2541 231 PRINTS ATP synthase delta subunit signature 199 217 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed04g2541 231 Hamap ATP synthase subunit delta [atpD]. 47 226 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed04g2541 231 Gene3D - 51 144 IPR026015 -
Sed04g2541 231 PANTHER ATP SYNTHASE DELTA CHAIN 19 227 IPR000711 GO:0000274(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0042776(PANTHER)|GO:0045261(PANTHER)|GO:0046933(InterPro)|GO:0046933(PANTHER)
Sed04g2541 231 NCBIfam ATP synthase F1 subunit delta 54 223 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed04g2541 231 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 186 205 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
Sed04g2541 231 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 52 153 IPR026015 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2541 Sed-Chr4:38225151 Sed04g2544 Sed-Chr4:38225151 4.00E-121 dispersed
Sed04g2541 Sed-Chr4:38225151 Sed04g2542 Sed-Chr4:38225151 1.70E-108 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2541 K02137 - rcu:8272168 328.946