Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2542 ATGCAGCTCTCAAGGACTTATGCCGCTACATCAGAGAAAAATGAAAAAAAGGTGAAGGTGCCACTTGCTTTGTTTGGAGGGTCTGGTAACTATGCCTCTGCTCTGTATATAGCTGCAGTAAAAGCTAATTCTCTTGGCAAGGTGGAGTCTGAGCTTGTTAACCTTGTCGATGCTATTAAGAAAAGTCCTACATTTGCTCAGTTCACAATGGACCTGTCAGTTCCAGCAGAAACTAGAGTTAAGGCTATCAATGAAATTTCTGCTGAAGCTAAATTTTCGGACGTTGTAAAGAACTTCTTGGTTGTTTTGGCTGAGAACGGGAGGCTGAGATATGCAGATAGCATAGCAAAGAGATTTTTGGAGTTGACTATGGCTCATAAGGGAGAACTTAAAGCAGTTGTTACTACTGTTATTCCCATTCCCCCACAAGAAGAGAAAGAATTGAAGGAGACATTGCAAGATATATTTGGACAAGGCAAGAAGGTTAAGCTCGAGCAGAAGATTGATCCCAGCATACTTGGTGGTCTAGTTGTAGAATTTGGCGAGAAAGTATTTGACATGTCTATCAAAACCCGTGCCCGTCAAATGGAGAGGTTCTTGCGCCAACCTGTTACTCTTGACTAG 624 42.15 MQLSRTYAATSEKNEKKVKVPLALFGGSGNYASALYIAAVKANSLGKVESELVNLVDAIKKSPTFAQFTMDLSVPAETRVKAINEISAEAKFSDVVKNFLVVLAENGRLRYADSIAKRFLELTMAHKGELKAVVTTVIPIPPQEEKELKETLQDIFGQGKKVKLEQKIDPSILGGLVVEFGEKVFDMSIKTRARQMERFLRQPVTLD 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38225151 38229156 - Sed0003633.2 Sed04g2542 711145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2542 207 NCBIfam ATP synthase F1 subunit delta 30 199 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed04g2542 207 PANTHER ATP SYNTHASE DELTA CHAIN 9 203 IPR000711 GO:0000274(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0042776(PANTHER)|GO:0045261(PANTHER)|GO:0046933(InterPro)|GO:0046933(PANTHER)
Sed04g2542 207 Gene3D - 27 120 IPR026015 -
Sed04g2542 207 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 162 181 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
Sed04g2542 207 Pfam ATP synthase delta (OSCP) subunit 29 198 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed04g2542 207 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 28 129 IPR026015 -
Sed04g2542 207 Hamap ATP synthase subunit delta [atpD]. 23 202 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed04g2542 207 PRINTS ATP synthase delta subunit signature 160 175 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed04g2542 207 PRINTS ATP synthase delta subunit signature 175 193 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed04g2542 207 PRINTS ATP synthase delta subunit signature 108 122 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed04g2542 207 PRINTS ATP synthase delta subunit signature 27 46 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed04g2542 207 PRINTS ATP synthase delta subunit signature 97 108 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2542 Sed-Chr4:38225151 Sed04g2545 Sed-Chr4:38225151 1.10E-109 dispersed
Sed04g2541 Sed-Chr4:38225151 Sed04g2542 Sed-Chr4:38225151 1.70E-108 tandem
Sed04g2542 Sed-Chr4:38225151 Sed04g2543 Sed-Chr4:38225151 1.50E-108 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2542 K02137 - rcu:8272168 315.464