Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2544 ATGGCGTTGGCTACTCGCCTGAGATCCACCATTCCCGTCCTCAGCAAGCTTTTGAGATCCGAATCGCCCTGCTCTCCGGTACTGCTCTCAAGGACTTATGCCGCTACATCAGAGAAAAATGAAAAAAAGGTGAAGGTGCCACTTGCTTTGTTTGGAGGGTCTGGTAACTATGCCTCTGCTCTGTATATAGCTGCAGTAAAAGCTAATTCTCTTGGCAAGGTGGAGTCTGAGCTTGTTAACCTTGTCGATGCTATTAAGAAAAGTCCTACATTTGCTCAGTTCACAATGGACCTGTCAGTTCCAGCAGAAACTAGAGTTAAGGCTATCAATGAAATTTCTGCTGAAGCTAAATTTTCGGACGTTGTAAAGAACTTCTTGGTTGTTTTGGCTGAGAACGGGAGGCTGAGATATGCAGATAGCATAGCAAAGAGATTTTTGGAGTTGACTATGGCTCATAAGGGAGAACTTAAAGCAGTTGTTACTACTGTTATTCCCATTCCCCCACAAGAAGAGAAAGAATTGAAGGAGACATTGCAAGATATATTTGGACAAGGCAAGAAGGTTAAGCTCGAGCAGAAGATTGATCCCAGCATACTTGGTGGTCTAGTTGTAGAATTTGGCGAGAAAGTATTTGACATGTCTATCAAAACCCGTGCCCGTCAAATGGAGAGGTTCTTGCGCCAACCTGTTACTCTTGACTAG 702 43.87 MALATRLRSTIPVLSKLLRSESPCSPVLLSRTYAATSEKNEKKVKVPLALFGGSGNYASALYIAAVKANSLGKVESELVNLVDAIKKSPTFAQFTMDLSVPAETRVKAINEISAEAKFSDVVKNFLVVLAENGRLRYADSIAKRFLELTMAHKGELKAVVTTVIPIPPQEEKELKETLQDIFGQGKKVKLEQKIDPSILGGLVVEFGEKVFDMSIKTRARQMERFLRQPVTLD 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38225151 38229156 - Sed0003633.4 Sed04g2544 711147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2544 233 Hamap ATP synthase subunit delta [atpD]. 49 228 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed04g2544 233 NCBIfam ATP synthase F1 subunit delta 56 225 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed04g2544 233 Gene3D - 53 146 IPR026015 -
Sed04g2544 233 PRINTS ATP synthase delta subunit signature 201 219 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed04g2544 233 PRINTS ATP synthase delta subunit signature 123 134 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed04g2544 233 PRINTS ATP synthase delta subunit signature 134 148 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed04g2544 233 PRINTS ATP synthase delta subunit signature 186 201 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed04g2544 233 PRINTS ATP synthase delta subunit signature 53 72 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed04g2544 233 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 54 155 IPR026015 -
Sed04g2544 233 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 188 207 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
Sed04g2544 233 Pfam ATP synthase delta (OSCP) subunit 55 224 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed04g2544 233 PANTHER ATP SYNTHASE DELTA CHAIN 22 229 IPR000711 GO:0000274(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0042776(PANTHER)|GO:0045261(PANTHER)|GO:0046933(InterPro)|GO:0046933(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2541 Sed-Chr4:38225151 Sed04g2544 Sed-Chr4:38225151 4.00E-121 dispersed
Sed04g2544 Sed-Chr4:38225151 Sed07g0658 Sed-Chr7:4935964 4.20E-86 dispersed
Sed04g2543 Sed-Chr4:38225151 Sed04g2544 Sed-Chr4:38225151 1.60E-108 tandem
Sed04g2544 Sed-Chr4:38225151 Sed04g2545 Sed-Chr4:38225151 1.70E-108 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2544 K02137 - rcu:8272168 329.717