Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2599 ATGGCCACTGAAGCTCATCAGAACGACTTCATTTTCCGGTCGAAATTGCCGGACATCGAAATCCCTAACCACCTTCCTCTGCACACCTACTGCCTTCAGGAAAACGCGGCGAAGTTCCGCCACCGGACCTGCCTAATCAACGGCCTCACGGGCCAAACCTTCACCTACAACGACGTCGATCTCGCCGCTCTCAACGTCGCCGCCGGATTGCACGAACTCGGCATTGCAAAAGGCGACGTAATCATGCTCCTCCTCCCGAACTCGCCGGAATTCGTCTTCGCCTTCCTCGGCGCGTCGCGCCTCGGCGCGATCATGACGGCGGCGAATCCGTTCTTCACGGCGGCGGAGATCGCGAAGCAAGCGAAAGGATCGAAGGCGAAGCTGATCATCACGCAATCGTCGTGCTACGAGAAATTGAAGGATATAACAGAGGAATTACCTGATGCGAAAATCATGACCGTCGATTCGGTTGCGGACGGTTGTTTATCGTTCGCCGATCTGTTCAAAGGCGAAAACGACGATTGTTCCATTCCGGCGGTGGAGATCCGGCCGGACGACGTGGTGGCGCTGCCGTACTCCTCCGGAACCACCGGATTTCCGAAAGGAGTGATGCTAACGCACAAAGGATTAGTGACGAGTGTAGCGCAGCAGGTGGACGGCGAGAATCCGAACCTGAACTACGGAATCGGCGATGTGATTCTGTGCGTTTTGCCGCTTTTTCATATCTATTCGCTGAATTCCGTTCTGCTGTGTGGATTGCGCGCCGGAACTGCGATTTTGTTGATACCTAAATTCGAGATCGGATCGGTTTTGAAAGTGGCGGAGAAATACAGAGTTTCGATTATGCCGATCGTGCCGCCGATTGTTCTTGCGATTGCGAAGTCGCCGGAGTTGGATAGCTACGATTTGTCGTCGATCAGAGTGATCAAATGCGGCGGCGCTCCGCTCGGGAAGGAGCTTGAAAATACCGTGAGAGCCAAGTTTCCCAATGCTGTGCTCGGCCAGGGGTACGGAATGACAGAGGCGGGGCCAGTACTGACAATGGGATTAGCATTTGCAAAGAACCCATTTCCGACGAAGCCCGGCGCGTGCGGCACCGTCGTCAGGAACGCCGAGATGAAGATCGTCGACACCGAAACCGGCGGCTCCCTGCCCCGAAACGCGCCGGGAGAGATCTGCATCAGAGGCGACCAGATCATGAAGGGCTATTGGAACAACCCGGAGGCCACCGCCGCCACCATCGACGGCGACGGCTGGCTGCACACCGGCGACATCGGCTTCGTCGACGACGACGACGAGCTCTTCATCGTCGATCGCTTGAAGGAGCTGATCAAGTACAAGGGGTTTCAAGTCGCGCCGGCCGAACTCGAAGCTCTCTTGCTCACTCATCCGGTCATCTCTGACGCAGCCGTTGTTCCAATGAAAGATGAACAAGCGGGAGAGGTTCCCGTTGCGTTTGTGGTGAAGTTCAAGAATTCTGAAGTTACTGAGGATGAAATTAAACGATTTATATCAAAACAAGTGGTTTTCTACAAGAGAATCAACCGGGTTTTTTTCATAGACGCAATTCCGAAATCGCCCTCCGGCAAGATCTTGAGGAAGGAGTTGAGGGCAAAGTTGTCAACTGATTTTCCAAATTCTAATTAA 1647 54.1 MATEAHQNDFIFRSKLPDIEIPNHLPLHTYCLQENAAKFRHRTCLINGLTGQTFTYNDVDLAALNVAAGLHELGIAKGDVIMLLLPNSPEFVFAFLGASRLGAIMTAANPFFTAAEIAKQAKGSKAKLIITQSSCYEKLKDITEELPDAKIMTVDSVADGCLSFADLFKGENDDCSIPAVEIRPDDVVALPYSSGTTGFPKGVMLTHKGLVTSVAQQVDGENPNLNYGIGDVILCVLPLFHIYSLNSVLLCGLRAGTAILLIPKFEIGSVLKVAEKYRVSIMPIVPPIVLAIAKSPELDSYDLSSIRVIKCGGAPLGKELENTVRAKFPNAVLGQGYGMTEAGPVLTMGLAFAKNPFPTKPGACGTVVRNAEMKIVDTETGGSLPRNAPGEICIRGDQIMKGYWNNPEATAATIDGDGWLHTGDIGFVDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPVISDAAVVPMKDEQAGEVPVAFVVKFKNSEVTEDEIKRFISKQVVFYKRINRVFFIDAIPKSPSGKILRKELRAKLSTDFPNSN 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38469866 38473413 - Sed0028111.1 Sed04g2599 711202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2599 548 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 441 - -
Sed04g2599 548 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Sed04g2599 548 SUPERFAMILY Acetyl-CoA synthetase-like 21 540 - -
Sed04g2599 548 Gene3D - 5 440 IPR042099 -
Sed04g2599 548 CDD 4CL 21 536 - -
Sed04g2599 548 FunFam 4-coumarate--CoA ligase 2 442 543 - -
Sed04g2599 548 Pfam AMP-binding enzyme 32 404 IPR000873 -
Sed04g2599 548 Gene3D - 441 543 IPR045851 -
Sed04g2599 548 Pfam AMP-binding enzyme C-terminal domain 455 530 IPR025110 -
Sed04g2599 548 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 537 - GO:0016405(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2599 Sed-Chr4:38469866 Sed07g0709 Sed-Chr7:5280572 1.10E-214 dispersed
Sed11g0511 Sed-Chr11:4996873 Sed04g2599 Sed-Chr4:38469866 3.80E-199 transposed
Sed04g2599 Sed-Chr4:38469866 Sed05g1380 Sed-Chr5:26808599 6.20E-266 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2599 K01904 - csv:101215427 914.45