Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2622 ATGGCAAGAATGTTCAATGGGGAGGGATCGTCGTCGGTAACTTCCTCGCCTTTGCAGCTCTTTCCGTGGTCGTTATCGCCCGGTATAGGATCTCCATACCCTTTTCTAAGGGAGCTCAAGTCTGAAGAGAGGGGCTTGTGTCTGATTCACCTTCTTCTTGCTTGTGCAAATCAAGTTTCCAATGGCAACATTGAAAATGCTAATGTTGGCCTTGAGCAAATTTCCCAGCTGGCTTCGCCCGACGGGGACACAATGCAGCGGATTGCTGCCTACTTCACCGAGGCACTCGCTGATCGAATACTTAAATCTTGGCCTGGCTTACACAAAGCCTTGAACTCTACCAAGATATTGTCAGTCCCAGAAGAGATTCTTGCTCAGAGATTGTTTTTTGAACTGTGTCCTTTCTTGAAGCTTGCATATGTCATAACTAATCAGGCTATTGTAGAAGCTATGGAAGGAGAGAGGATGATTCATATTATTGATTTCAAATCTTGTGAACCTGCTCAATGGATAAACCTTTTTCAGACTTTGAAAGATAGACCAGACGGCCCGCCCCACTTGAGAATAACTGGAATTCACGAACATAAGGAGGTGTTGGAACAAATGGCTCTTCGGCTTACCGAAGAGGCCGAGAAATGGAACATACCATTTCAGTTCACCCCAGTCGTTAGTAAGTTAGAAAATCTTGACCTTGGAACTTTAAAGGTCAAGACAGGGGAAGCACTTGCAGTAAGCTCTGTACTTGAACTTCACTCAATTTTAGCTACCGACAACGATAAGAAAACATCACCATCATTGAAGAACTTGCAAAAACGGCTACGTATGAAGCAACGAACACTCGGAGAGTGGCTCGAGACAGATTCCTTACAAGTTTTTAGTAGCCCTGATTCAACATTAGTATCTTCCCCATCAGGATTGAATTCTTCTCAAAAGATGAATAGTTTTTTTAGTGCACTCTGGGGTCTTTCTCCAAAAGTGATGGTAATAACAGAGCAAGAATCGAACCTCAATGGATCAACTTTCATGGAGAGAGTACTAGAAGCACTTAACTTCTATGCTGCATTGTTTGATTGCTTGGAGTCGACCGTGTCAAGATCATCTATAGAGCGACAAAGGGTCGAGAAGATGCTTTTAGGAGAGGAAATAAAAAACATCATTGCTTGTGAGGGGGTAGAGAGAACAGAGAGGCACGAAAAGCTCGAGAAATGGATACTTAGGCTTGAGTCTGTGGGGTTCGGGAGGGTTCCATTGAGTTATCACAATATGGTACTAGGGAGTGGATTGTTGCAGAGCTATGGATATAATGGGTATAAAATCAAAGAAGATAATGGATTTTTGTTCATCTGTTGGCAAGATAGGCCACTTTTTTCAGCCTCAGCTTGGGGGTTTCAAAGACAAAGCTGA 1404 43.23 MARMFNGEGSSSVTSSPLQLFPWSLSPGIGSPYPFLRELKSEERGLCLIHLLLACANQVSNGNIENANVGLEQISQLASPDGDTMQRIAAYFTEALADRILKSWPGLHKALNSTKILSVPEEILAQRLFFELCPFLKLAYVITNQAIVEAMEGERMIHIIDFKSCEPAQWINLFQTLKDRPDGPPHLRITGIHEHKEVLEQMALRLTEEAEKWNIPFQFTPVVSKLENLDLGTLKVKTGEALAVSSVLELHSILATDNDKKTSPSLKNLQKRLRMKQRTLGEWLETDSLQVFSSPDSTLVSSPSGLNSSQKMNSFFSALWGLSPKVMVITEQESNLNGSTFMERVLEALNFYAALFDCLESTVSRSSIERQRVEKMLLGEEIKNIIACEGVERTERHEKLEKWILRLESVGFGRVPLSYHNMVLGSGLLQSYGYNGYKIKEDNGFLFICWQDRPLFSASAWGFQRQS 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38644212 38646841 + Sed0024948.2 Sed04g2622 711225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2622 467 Coils Coil 266 286 - -
Sed04g2622 467 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 43 461 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Sed04g2622 467 Pfam GRAS domain family 48 461 IPR005202 -
Sed04g2622 467 ProSiteProfiles GRAS family profile. 39 462 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2622 Sed-Chr4:38644212 Sed07g2291 Sed-Chr7:38752469 1.30E-248 dispersed
Sed04g2621 Sed-Chr4:38644212 Sed04g2622 Sed-Chr4:38644212 6.10E-270 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38261 PF03514 GRAS 5.90E-134 CL0063 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2622 - - - 0.0