Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g2641 | ATGTCATTGAAGTTACAACATATTGATCTCAAGGGTGGTTCAGGTACCCAGAAAAGGCTGAAGGATCTCTCAGCTCAGACTACCAATAAGTACTGTGCAGATTGTGGATCTCCAGATCCAAAATGGGTATCTTTGACTTTTGGGGCATTTATTTGCATCAAGTGTTCCGGGGTACACCGCAGCCTTGGAGTGCATATATCTAAGGTTCTTTCAGTGAAGTTAGATGATTGGACAGATGAACAAGTTGATGCTTTGATGGGTGTAGGTGGAAATAATGCAGTAAACGAAAAGTATGAAGTCTACATCCCAGATGGCAATAAAAAGCCTATGCCAGGCTCTTCCATAGAGGAGCGTGTTGATTTTATAAGGAAAAAATATCAGCTGCTGCAATTCTCAAGTTTTGATGAGGAGCTTTGCTGTCCTTTTCCACCCCCGCAGAAGAGAAAATTATCATTATCGAATACCACTTCTAGCGATAATGGAAACCAAGAAAAGATTAATTGTGAAAAACAACCAACAAAAAATCAAATTGGAAATGCATTTCAGAACAGCTGGGGAAGAAAAGATTCTGAACATAAGAACTGCAAGAAGGGAGATTCATTGGTATTAAGCAACTCAATGGCAGGCATGATAGAATTTGTTGGTTTAATTAAGGTCAACGTGGTTAAAGGAATCAATTTAGTTGTCAGGGATGTCGTGTCGAGCGACCCATACGTAATTCTCTCGTTGGGTAATCAATCGGTGAAGACACGTGTTATAAAGAGCAGTTTGAATCCAGTTTGGAATGAGAGCCTAATGTTGTCAATTCCAGATTTCGTTCCTCCTTTAAGGGTGCTTGTGTATGACCAAGATACATTTTCGACCGATGACTTCATGGGTGAAGCAGAAATCGACATCCATCCGCTGCTCTTCGCTGCCCAAGCCTGTGAGAGGTCCACAATCTGTGAACCAATGCAGCTAGGAAAATGGGTTGCAAGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCAATGTTGTGGATGGGAAGGTCCGACAAGACATCTCCTTGAAGCTTCAGAACGTCGAGAGTGGCGAGCTAGAGATGGAGCTTGAATGTGTTCCTCTCTCCCAGTAG | 1116 | 42.38 | MSLKLQHIDLKGGSGTQKRLKDLSAQTTNKYCADCGSPDPKWVSLTFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALMGVGGNNAVNEKYEVYIPDGNKKPMPGSSIEERVDFIRKKYQLLQFSSFDEELCCPFPPPQKRKLSLSNTTSSDNGNQEKINCEKQPTKNQIGNAFQNSWGRKDSEHKNCKKGDSLVLSNSMAGMIEFVGLIKVNVVKGINLVVRDVVSSDPYVILSLGNQSVKTRVIKSSLNPVWNESLMLSIPDFVPPLRVLVYDQDTFSTDDFMGEAEIDIHPLLFAAQACERSTICEPMQLGKWVASKENTLAKDGIINVVDGKVRQDISLKLQNVESGELEMELECVPLSQ | 371 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 38919551 | 38925305 | + | Sed0014213.1 | Sed04g2641 | 711244 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g2641 | 371 | SMART | C2_3c | 216 | 311 | IPR000008 | - | |
Sed04g2641 | 371 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 214 | 309 | IPR035892 | - | |
Sed04g2641 | 371 | FunFam | stromal membrane-associated protein 1 isoform X1 | 6 | 137 | - | - | |
Sed04g2641 | 371 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 17 | 131 | IPR037278 | - | |
Sed04g2641 | 371 | MobiDBLite | consensus disorder prediction | 149 | 173 | - | - | |
Sed04g2641 | 371 | Pfam | Putative GTPase activating protein for Arf | 18 | 131 | IPR001164 | GO:0005096(InterPro) | |
Sed04g2641 | 371 | CDD | C2_ArfGAP | 214 | 358 | - | - | |
Sed04g2641 | 371 | Gene3D | C2 domain | 214 | 371 | IPR035892 | - | |
Sed04g2641 | 371 | Gene3D | Arf GTPase activating protein | 5 | 138 | IPR038508 | - | |
Sed04g2641 | 371 | PRINTS | HIV Rev interacting protein signature | 69 | 90 | IPR001164 | GO:0005096(InterPro) | |
Sed04g2641 | 371 | PRINTS | HIV Rev interacting protein signature | 29 | 48 | IPR001164 | GO:0005096(InterPro) | |
Sed04g2641 | 371 | PRINTS | HIV Rev interacting protein signature | 48 | 65 | IPR001164 | GO:0005096(InterPro) | |
Sed04g2641 | 371 | SMART | arf_gap_3 | 17 | 139 | IPR001164 | GO:0005096(InterPro) | |
Sed04g2641 | 371 | Pfam | C2 domain | 216 | 302 | IPR000008 | - | |
Sed04g2641 | 371 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 13 | 371 | IPR044518 | GO:0005096(InterPro)|GO:0005543(InterPro) | |
Sed04g2641 | 371 | FunFam | ADP-ribosylation factor GTPase-activating protein AGD12 | 213 | 371 | - | - | |
Sed04g2641 | 371 | ProSiteProfiles | C2 domain profile. | 196 | 313 | IPR000008 | - | |
Sed04g2641 | 371 | CDD | ArfGap | 20 | 126 | - | - | |
Sed04g2641 | 371 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 17 | 131 | IPR001164 | GO:0005096(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g2641 | Sed-Chr4:38919551 | Sed10g0063 | Sed-Chr10:385591 | 6.90E-91 | dispersed | |
Sed04g2641 | Sed-Chr4:38919551 | Sed04g2642 | Sed-Chr4:38919551 | 5.30E-160 | tandem | |
Sed04g2641 | Sed-Chr4:38919551 | Sed07g2303 | Sed-Chr7:38818033 | 6.90E-184 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g2641 | K12486 | - | csv:101221541 | 635.18 |