Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2642 ATGTCATTGAAGTTACAACATATTGATCTCAAGGGTGGTTCAGGTACCCAGAAAAGGCTGAAGGATCTCTCAGCTCAGACTACCAATAAGTACTGTGCAGATTGTGGATCTCCAGATCCAAAATGGGTATCTTTGACTTTTGGGGCATTTATTTGCATCAAGTGTTCCGGGGTACACCGCAGCCTTGGAGTGCATATATCTAAGGTTCTTTCAGTGAAGTTAGATGATTGGACAGATGAACAAGTTGATGCTTTGATGGGTGTAGGTGGAAATAATGCAGTAAACGAAAAGTATGAAGTCTACATCCCAGATGGCAATAAAAAGCCTATGCCAGGCTCTTCCATAGAGGAGCGTGTTGATTTTATAAGGAAAAAATATCAGCTGCTGCAATTCTCAAGTTTTGATGAGGAGCTTTGCTGTCCTTTTCCACCCCCGCAGAAGAGAAAATTATCATTATCGAATACCACTTCTAGCGATAATGGAAACCAAGAAAAGATTAATTGTGAAAAACAACCAACAAAAAATCAAATTGGAAATGCATTTCAGAACAGCTGGGGAAGAAAAGATTCTGAACATAAGAACTGCAAGAAGGGAGATTCATTGGTATTAAGCAACTCAATGGCAGGCATGATAGAATTTGTTGGTTTAATTAAGGTCAACGTGGTTAAAGGAATCAATTTAGTTGTCAGGGATGTCGTGTCGAGCGACCCATACGTAATTCTCTCGTTGGGTAATCAATCGGTGAAGACACGTGTTATAAAGAGCAGTTTGAATCCAGTTTGGAATGAGAGCCTAATGTTGTCAATTCCAGATTTCGTTCCTCCTTTAAGGGTGGTAAGTTGGATGACCGTAAAATTTGTCCAAATCACGTGGAATTTACTGATTAAACGTTGTCGATATTCTGACTGTAAATGTAAAATTTCTCAAACTACTTTTGATCATTGA 945 39.05 MSLKLQHIDLKGGSGTQKRLKDLSAQTTNKYCADCGSPDPKWVSLTFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALMGVGGNNAVNEKYEVYIPDGNKKPMPGSSIEERVDFIRKKYQLLQFSSFDEELCCPFPPPQKRKLSLSNTTSSDNGNQEKINCEKQPTKNQIGNAFQNSWGRKDSEHKNCKKGDSLVLSNSMAGMIEFVGLIKVNVVKGINLVVRDVVSSDPYVILSLGNQSVKTRVIKSSLNPVWNESLMLSIPDFVPPLRVVSWMTVKFVQITWNLLIKRCRYSDCKCKISQTTFDH 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38919551 38925305 + Sed0014213.2 Sed04g2642 711245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2642 314 Pfam C2 domain 216 278 IPR000008 -
Sed04g2642 314 ProSiteProfiles C2 domain profile. 196 314 IPR000008 -
Sed04g2642 314 Gene3D C2 domain 206 286 IPR035892 -
Sed04g2642 314 MobiDBLite consensus disorder prediction 149 173 - -
Sed04g2642 314 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 13 278 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Sed04g2642 314 SUPERFAMILY ArfGap/RecO-like zinc finger 17 131 IPR037278 -
Sed04g2642 314 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 213 278 IPR035892 -
Sed04g2642 314 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096(InterPro)
Sed04g2642 314 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096(InterPro)
Sed04g2642 314 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096(InterPro)
Sed04g2642 314 SMART arf_gap_3 17 139 IPR001164 GO:0005096(InterPro)
Sed04g2642 314 Pfam Putative GTPase activating protein for Arf 18 131 IPR001164 GO:0005096(InterPro)
Sed04g2642 314 SMART C2_3c 216 314 IPR000008 -
Sed04g2642 314 CDD ArfGap 20 126 - -
Sed04g2642 314 Gene3D Arf GTPase activating protein 5 138 IPR038508 -
Sed04g2642 314 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 131 IPR001164 GO:0005096(InterPro)
Sed04g2642 314 FunFam stromal membrane-associated protein 1 isoform X1 6 137 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2642 Sed-Chr4:38919551 Sed07g2303 Sed-Chr7:38818033 6.10E-133 dispersed
Sed04g2641 Sed-Chr4:38919551 Sed04g2642 Sed-Chr4:38919551 5.30E-160 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2642 K12486 - csv:101221541 468.388