Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2658 ATGAAGAGCGGGGTGTTTAAAGATGATGAAGATGTTAAGACGAAGGATGGAAAATCCAATATCTGCAAGGAATGTGGCGCTGCTTTCAAGAAGCCTGCTTACTTGAAGCAACATATGCAAAGCCATTCGCTCGAGCGGCCGTATATTTGTACTGTTGATGGTTGTGAAGCCAGTTACAGAAGAAAGGATCATTTGACTCGACACCTTCTCCAGCATACAAAAACAATACTCAAGTGCCCAATTGAGGGTTGTAGCATTGAATATGCACGTATATCCGATATGAATGGACACTTGAAAGAATTCCATGAGGGTGATACTCCCGAAGATGAATGTCCGAAGCAGCAGGTTTGTCCTGAAGATGAACGTCAGAAGCAGCATGTATGTACCGAAGATGAATGTCAGAAGCAGAATGTTTGTCTTGAAGATGAATGTGAGAAGAAGCATGTTTGCTCCGAAGATGGATGTGGAAAGGCTTTCAGATATGCCTCTCAACTTCAGAAGCACGAAGAGTCCCACATTAAGCTAGAGTCAATAGAGGCACATTGTACTGAACCGGGTTGCATGAAAACATTCACCAACAAGAAATGCCTCAAGGATCATATACTGTCCTGCCACCAATACATAAAATGTGAGATTTGTGGGGAAAAGAAGTTGAGAAAGAACATCAAGCAACATCTACGACTAAAGCATGAAAGTGAAGGTCCACGAAAAACAATTCAATGCACACACGAGGGCTGCAGTAGCATTTTTTCAACTAATTCTAATCTCCGCCAACACATTAAGGTCGTTCATCAAGGACAAAAGCCTTTTGTATGTTGTTTCCCGGGATGCGGCATGAGATTTGGGTACAAGCATGTTCGAGACAATCACGAGAAAAGTGGTCAACATGTTTACACCGATGTAAGTTTGCATTTGGAGATTTTATGTGTTAATGTACTTTTGAGTTTTGGATAG 954 41.72 MKSGVFKDDEDVKTKDGKSNICKECGAAFKKPAYLKQHMQSHSLERPYICTVDGCEASYRRKDHLTRHLLQHTKTILKCPIEGCSIEYARISDMNGHLKEFHEGDTPEDECPKQQVCPEDERQKQHVCTEDECQKQNVCLEDECEKKHVCSEDGCGKAFRYASQLQKHEESHIKLESIEAHCTEPGCMKTFTNKKCLKDHILSCHQYIKCEICGEKKLRKNIKQHLRLKHESEGPRKTIQCTHEGCSSIFSTNSNLRQHIKVVHQGQKPFVCCFPGCGMRFGYKHVRDNHEKSGQHVYTDVSLHLEILCVNVLLSFG 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39038258 39041254 - Sed0001108.3 Sed04g2658 711261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2658 317 Pfam Zinc finger, C2H2 type 148 172 IPR013087 -
Sed04g2658 317 Pfam Zinc finger, C2H2 type 240 264 IPR013087 -
Sed04g2658 317 Pfam Zinc finger, C2H2 type 22 42 IPR013087 -
Sed04g2658 317 Pfam Zinc finger, C2H2 type 48 72 IPR013087 -
Sed04g2658 317 ProSitePatterns Zinc finger C2H2 type domain signature. 22 42 IPR013087 -
Sed04g2658 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 20 47 IPR013087 -
Sed04g2658 317 SUPERFAMILY beta-beta-alpha zinc fingers 34 74 IPR036236 -
Sed04g2658 317 ProSitePatterns Zinc finger C2H2 type domain signature. 79 102 IPR013087 -
Sed04g2658 317 PANTHER ZINC FINGER PROTEIN 10 296 IPR051061 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0005730(PANTHER)|GO:0006357(PANTHER)|GO:0080084(PANTHER)
Sed04g2658 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 73 IPR013087 -
Sed04g2658 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 239 269 IPR013087 -
Sed04g2658 317 SMART c2h2final6 77 102 IPR013087 -
Sed04g2658 317 SMART c2h2final6 20 42 IPR013087 -
Sed04g2658 317 SMART c2h2final6 180 205 IPR013087 -
Sed04g2658 317 SMART c2h2final6 270 296 IPR013087 -
Sed04g2658 317 SMART c2h2final6 239 264 IPR013087 -
Sed04g2658 317 SMART c2h2final6 208 230 IPR013087 -
Sed04g2658 317 SMART c2h2final6 48 72 IPR013087 -
Sed04g2658 317 SMART c2h2final6 148 172 IPR013087 -
Sed04g2658 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 177 IPR013087 -
Sed04g2658 317 ProSitePatterns Zinc finger C2H2 type domain signature. 241 264 IPR013087 -
Sed04g2658 317 Gene3D Classic Zinc Finger 48 75 - -
Sed04g2658 317 Gene3D Classic Zinc Finger 10 47 - -
Sed04g2658 317 Gene3D Classic Zinc Finger 143 230 - -
Sed04g2658 317 Gene3D Classic Zinc Finger 235 300 - -
Sed04g2658 317 SUPERFAMILY beta-beta-alpha zinc fingers 222 276 IPR036236 -
Sed04g2658 317 ProSitePatterns Zinc finger C2H2 type domain signature. 272 296 IPR013087 -
Sed04g2658 317 ProSitePatterns Zinc finger C2H2 type domain signature. 150 172 IPR013087 -
Sed04g2658 317 ProSitePatterns Zinc finger C2H2 type domain signature. 182 205 IPR013087 -
Sed04g2658 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 107 IPR013087 -
Sed04g2658 317 SUPERFAMILY beta-beta-alpha zinc fingers 145 174 IPR036236 -
Sed04g2658 317 ProSitePatterns Zinc finger C2H2 type domain signature. 50 72 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2658 Sed-Chr4:39038258 Sed07g2319 Sed-Chr7:39058844 5.80E-123 dispersed
Sed04g2657 Sed-Chr4:39038258 Sed04g2658 Sed-Chr4:39038258 5.20E-149 tandem
Sed04g2658 Sed-Chr4:39038258 Sed04g2659 Sed-Chr4:39038258 1.20E-131 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38267 PF00096 zf-C2H2 0.0052 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2658 K09191 - csv:101217595 442.195