Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2659 ATGCAGCGGCCGTATATTTGTACTGTTGATGGTTGTGAAGCCAGTTACAGAAGAAAGGATCATTTGACTCGACACCTTCTCCAGCATACAAAAACAATACTCAAGTGCCCAATTGAGGGTTGTAGCATTGAATATGCACGTATATCCGATATGAATGGACACTTGAAAGAATTCCATGAGGGTGATACTCCCGAAGATGAATGTCCGAAGCAGCAGGTTTGTCCTGAAGATGAACGTCAGAAGCAGCATGTATGTACCGAAGATGAATGTCAGAAGCAGAATGTTTGTCTTGAAGATGAATGTGAGAAGAAGCATGTTTGCTCCGAAGATGGATGTGGAAAGGCTTTCAGATATGCCTCTCAACTTCAGAAGCACGAAGAGTCCCACATTAAGCTAGAGTCAATAGAGGCACATTGTACTGAACCGGGTTGCATGAAAACATTCACCAACAAGAAATGCCTCAAGGATCATATACTGTCCTGCCACCAATACATAAAATGTGAGATTTGTGGGGAAAAGAAGTTGAGAAAGAACATCAAGCAACATCTACGACTAAAGCATGAAAGTGAAGGTCCACGAAAAACAATTCAATGCACACACGAGGGCTGCAGTAGCATTTTTTCAACTAATTCTAATCTCCGCCAACACATTAAGGTCGTTCATCAAGGACAAAAGCCTTTTGTATGTTGTTTCCCGGGATGCGGCATGAGATTTGGGTACAAGCATGTTCGAGACAATCACGAGAAAAGTGGTCAACATGTTTACACCGATGTAAGTTTGCATTTGGAGATTTTATGTGTTAATGTACTTTTGAGTTTTGGATAG 825 41.45 MQRPYICTVDGCEASYRRKDHLTRHLLQHTKTILKCPIEGCSIEYARISDMNGHLKEFHEGDTPEDECPKQQVCPEDERQKQHVCTEDECQKQNVCLEDECEKKHVCSEDGCGKAFRYASQLQKHEESHIKLESIEAHCTEPGCMKTFTNKKCLKDHILSCHQYIKCEICGEKKLRKNIKQHLRLKHESEGPRKTIQCTHEGCSSIFSTNSNLRQHIKVVHQGQKPFVCCFPGCGMRFGYKHVRDNHEKSGQHVYTDVSLHLEILCVNVLLSFG 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39038258 39041254 - Sed0001108.4 Sed04g2659 711262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2659 274 SUPERFAMILY beta-beta-alpha zinc fingers 3 31 IPR036236 -
Sed04g2659 274 ProSitePatterns Zinc finger C2H2 type domain signature. 198 221 IPR013087 -
Sed04g2659 274 Pfam Zinc finger, C2H2 type 105 129 IPR013087 -
Sed04g2659 274 Pfam Zinc finger, C2H2 type 197 221 IPR013087 -
Sed04g2659 274 Pfam Zinc finger, C2H2 type 5 29 IPR013087 -
Sed04g2659 274 ProSitePatterns Zinc finger C2H2 type domain signature. 229 253 IPR013087 -
Sed04g2659 274 PANTHER ZINC FINGER PROTEIN 3 93 IPR051061 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0005730(PANTHER)|GO:0006357(PANTHER)|GO:0080084(PANTHER)
Sed04g2659 274 Gene3D Classic Zinc Finger 2 32 - -
Sed04g2659 274 SUPERFAMILY beta-beta-alpha zinc fingers 102 131 IPR036236 -
Sed04g2659 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 30 IPR013087 -
Sed04g2659 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 196 226 IPR013087 -
Sed04g2659 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 134 IPR013087 -
Sed04g2659 274 ProSitePatterns Zinc finger C2H2 type domain signature. 36 59 IPR013087 -
Sed04g2659 274 SMART c2h2final6 196 221 IPR013087 -
Sed04g2659 274 SMART c2h2final6 227 253 IPR013087 -
Sed04g2659 274 SMART c2h2final6 137 162 IPR013087 -
Sed04g2659 274 SMART c2h2final6 165 187 IPR013087 -
Sed04g2659 274 SMART c2h2final6 34 59 IPR013087 -
Sed04g2659 274 SMART c2h2final6 105 129 IPR013087 -
Sed04g2659 274 SMART c2h2final6 5 29 IPR013087 -
Sed04g2659 274 ProSitePatterns Zinc finger C2H2 type domain signature. 107 129 IPR013087 -
Sed04g2659 274 ProSitePatterns Zinc finger C2H2 type domain signature. 139 162 IPR013087 -
Sed04g2659 274 ProSitePatterns Zinc finger C2H2 type domain signature. 7 29 IPR013087 -
Sed04g2659 274 SUPERFAMILY beta-beta-alpha zinc fingers 179 233 IPR036236 -
Sed04g2659 274 Gene3D Classic Zinc Finger 192 257 - -
Sed04g2659 274 Gene3D Classic Zinc Finger 100 187 - -
Sed04g2659 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 64 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2656 Sed-Chr4:39038258 Sed04g2659 Sed-Chr4:39038258 1.20E-122 dispersed
Sed04g2659 Sed-Chr4:39038258 Sed07g2320 Sed-Chr7:39058844 8.10E-105 dispersed
Sed04g2658 Sed-Chr4:39038258 Sed04g2659 Sed-Chr4:39038258 1.20E-131 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38268 PF00096 zf-C2H2 0.0043 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2659 K09191 - csv:101217595 375.555