Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g2662 | ATGCCCTTGATTTCCATATCTTGCAGTATTACAGAGAACTTCAAAGTATATGCCATGGCTGATGGCAGTCCAAGGACCGACATCTCTACAGATGCTGACACAGATGACAAAAATCAGAGGCTTGATATGGCTCTGCGTAATGCTGCTATGGCTTCCGATTCCAGTGATAGAACAAAAGATAAGTCTGATCAGAAGACTCTACGCAGGCTTGCACAGAATAGAGAAGCTGCCAGAAAAAGCCGACTGCGGAAAAAAGCATATGTTCAACAGCTGGAGAGTAGTCGTTTAAAGTTGACCCAACTAGAGCAGGAGCTTCAGCGAGCACGGCAGCAGGGAATCTTCATATCAGGCTCAGGAGATCAGGCTCATTCAATGGCTGGAAATGGGGCCATGGCATTTGATGTGGAGTATGCCCGTTGGTTGGAAGAACAAAACAAGCAGATCAATGAACTGAGAGCAGCAGTAAACTCTCATGCTAGTGATACTGAACTTCGAATGGTTGTTGATGGTGTCTTGCTTCATTACGATGAGGTTTTTCGGCTGAAAGGCGTCGCCGCAAAGGCTGATGTTTTCCATTTATTGTCTGGCATGTGGAAAACTCCTGCTGAAAGATGTTTTTTGTGGCTTGGTGGTTTTCGTTCATCTGAGCTCCTAAAGCTTCTTGCCAATCAATTAGAGCCCCTCACAGAACAGCAGTTGCTGGGCATATCCAACTTGCAGCAGTCTTCACAACAGACTGAAGATGCATTGTCACAAGGCATGGAAGCATTGCAACAATCGTTGGCTGAGACGTTGTCCAATGGGTCTCTTGGCTCCTCAAATACGCCTGGCAATGTGGCAAACTACATGGGTCAAATGGCCACAGCCATGGGTAAACTTGGGACTCTTGAGGGGTTTATTCGCCAGGCTGACAATCTACGACAACAAACACTGCAACAAATGCATCGGATATTGACAACTCGTCAGTCGGCTCGTGCACTTCTTGCAATCCATGATTACTTCTCCAGATTACGAGCCCTTAGTTCCCTCTGGCTAGCTCGTCCAAAAGAGTGA | 1053 | 46.63 | MPLISISCSITENFKVYAMADGSPRTDISTDADTDDKNQRLDMALRNAAMASDSSDRTKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISGSGDQAHSMAGNGAMAFDVEYARWLEEQNKQINELRAAVNSHASDTELRMVVDGVLLHYDEVFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLANQLEPLTEQQLLGISNLQQSSQQTEDALSQGMEALQQSLAETLSNGSLGSSNTPGNVANYMGQMATAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPKE | 350 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 39068829 | 39075671 | + | Sed0003305.1 | Sed04g2662 | 711265 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g2662 | 350 | Pfam | bZIP transcription factor | 65 | 105 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g2662 | 350 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 68 | 83 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g2662 | 350 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 36 | 350 | - | - | |
Sed04g2662 | 350 | ProSiteProfiles | DOG1 domain profile. | 130 | 347 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed04g2662 | 350 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 63 | 107 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g2662 | 350 | Gene3D | - | 64 | 113 | - | - | |
Sed04g2662 | 350 | SMART | brlzneu | 61 | 124 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g2662 | 350 | FunFam | BZIP family transcription factor | 64 | 113 | - | - | |
Sed04g2662 | 350 | SUPERFAMILY | Leucine zipper domain | 65 | 108 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g2662 | 350 | Pfam | Seed dormancy control | 147 | 222 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed04g2662 | 350 | Coils | Coil | 141 | 161 | - | - | |
Sed04g2662 | 350 | CDD | bZIP_HBP1b-like | 65 | 117 | - | - | |
Sed04g2662 | 350 | Coils | Coil | 84 | 111 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0071 | Sed-Chr4:431713 | Sed04g2662 | Sed-Chr4:39068829 | 9.00E-143 | dispersed | |
Sed04g0072 | Sed-Chr4:431713 | Sed04g2662 | Sed-Chr4:39068829 | 2.30E-116 | dispersed | |
Sed04g2662 | Sed-Chr4:39068829 | Sed04g2666 | Sed-Chr4:39068829 | 1.80E-178 | dispersed | |
Sed04g2662 | Sed-Chr4:39068829 | Sed04g2663 | Sed-Chr4:39068829 | 1.80E-178 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38269 | PF14144 | DOG1 | 4.50E-32 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g2662 | K14431 | - | csv:101216885 | 584.719 |