Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2662 ATGCCCTTGATTTCCATATCTTGCAGTATTACAGAGAACTTCAAAGTATATGCCATGGCTGATGGCAGTCCAAGGACCGACATCTCTACAGATGCTGACACAGATGACAAAAATCAGAGGCTTGATATGGCTCTGCGTAATGCTGCTATGGCTTCCGATTCCAGTGATAGAACAAAAGATAAGTCTGATCAGAAGACTCTACGCAGGCTTGCACAGAATAGAGAAGCTGCCAGAAAAAGCCGACTGCGGAAAAAAGCATATGTTCAACAGCTGGAGAGTAGTCGTTTAAAGTTGACCCAACTAGAGCAGGAGCTTCAGCGAGCACGGCAGCAGGGAATCTTCATATCAGGCTCAGGAGATCAGGCTCATTCAATGGCTGGAAATGGGGCCATGGCATTTGATGTGGAGTATGCCCGTTGGTTGGAAGAACAAAACAAGCAGATCAATGAACTGAGAGCAGCAGTAAACTCTCATGCTAGTGATACTGAACTTCGAATGGTTGTTGATGGTGTCTTGCTTCATTACGATGAGGTTTTTCGGCTGAAAGGCGTCGCCGCAAAGGCTGATGTTTTCCATTTATTGTCTGGCATGTGGAAAACTCCTGCTGAAAGATGTTTTTTGTGGCTTGGTGGTTTTCGTTCATCTGAGCTCCTAAAGCTTCTTGCCAATCAATTAGAGCCCCTCACAGAACAGCAGTTGCTGGGCATATCCAACTTGCAGCAGTCTTCACAACAGACTGAAGATGCATTGTCACAAGGCATGGAAGCATTGCAACAATCGTTGGCTGAGACGTTGTCCAATGGGTCTCTTGGCTCCTCAAATACGCCTGGCAATGTGGCAAACTACATGGGTCAAATGGCCACAGCCATGGGTAAACTTGGGACTCTTGAGGGGTTTATTCGCCAGGCTGACAATCTACGACAACAAACACTGCAACAAATGCATCGGATATTGACAACTCGTCAGTCGGCTCGTGCACTTCTTGCAATCCATGATTACTTCTCCAGATTACGAGCCCTTAGTTCCCTCTGGCTAGCTCGTCCAAAAGAGTGA 1053 46.63 MPLISISCSITENFKVYAMADGSPRTDISTDADTDDKNQRLDMALRNAAMASDSSDRTKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISGSGDQAHSMAGNGAMAFDVEYARWLEEQNKQINELRAAVNSHASDTELRMVVDGVLLHYDEVFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLANQLEPLTEQQLLGISNLQQSSQQTEDALSQGMEALQQSLAETLSNGSLGSSNTPGNVANYMGQMATAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPKE 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39068829 39075671 + Sed0003305.1 Sed04g2662 711265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2662 350 Pfam bZIP transcription factor 65 105 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g2662 350 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 68 83 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g2662 350 PANTHER TRANSCRIPTION FACTOR TGA9 36 350 - -
Sed04g2662 350 ProSiteProfiles DOG1 domain profile. 130 347 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed04g2662 350 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 63 107 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g2662 350 Gene3D - 64 113 - -
Sed04g2662 350 SMART brlzneu 61 124 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g2662 350 FunFam BZIP family transcription factor 64 113 - -
Sed04g2662 350 SUPERFAMILY Leucine zipper domain 65 108 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g2662 350 Pfam Seed dormancy control 147 222 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed04g2662 350 Coils Coil 141 161 - -
Sed04g2662 350 CDD bZIP_HBP1b-like 65 117 - -
Sed04g2662 350 Coils Coil 84 111 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0071 Sed-Chr4:431713 Sed04g2662 Sed-Chr4:39068829 9.00E-143 dispersed
Sed04g0072 Sed-Chr4:431713 Sed04g2662 Sed-Chr4:39068829 2.30E-116 dispersed
Sed04g2662 Sed-Chr4:39068829 Sed04g2666 Sed-Chr4:39068829 1.80E-178 dispersed
Sed04g2662 Sed-Chr4:39068829 Sed04g2663 Sed-Chr4:39068829 1.80E-178 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38269 PF14144 DOG1 4.50E-32 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2662 K14431 - csv:101216885 584.719