Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2664 ATGGCTGATGGCAGTCCAAGGACCGACATCTCTACAGATGCTGACACAGATGACAAAAATCAGAGGCTTGATATGGCTCTGCGTAATGCTGCTATGGCTTCCGATTCCAGTGATAGAACAAAAGATAAGTCTGATCAGAAGACTCTACGCAGGCTTGCACAGAATAGAGAAGCTGCCAGAAAAAGCCGACTGCGGAAAAAAGCATATGTTCAACAGCTGGAGAGTAGTCGTTTAAAGTTGACCCAACTAGAGCAGGAGCTTCAGCGAGCACGGCAGCAGGGAATCTTCATATCAGGCTCAGGAGATCAGGCTCATTCAATGGCTGGAAATGGGGCCATGGCATTTGATGTGGAGTATGCCCGTTGGTTGGAAGAACAAAACAAGCAGATCAATGAACTGAGAGCAGCAGTAAACTCTCATGCTAGTGATACTGAACTTCGAATGGTTGTTGATGGTGTCTTGCTTCATTACGATGAGGTTTTTCGGCTGAAAGGCGTCGCCGCAAAGGCTGATGTTTTCCATTTATTGTCTGGCATGTGGAAAACTCCTGCTGAAAGATGTTTTTTGTGGCTTGGTGGTTTTCGTTCATCTGAGCTCCTAAAGCTTCTTGCCAATCAATTAGAGCCCCTCACAGAACAGCAGTTGCTGGGCATATCCAACTTGCAGCAGTCTTCACAACAGACTGAAGATGCATTGTCACAAGGCATGGAAGCATTGCAACAATCGTTGGCTGAGACGTTGTCCAATGGGTCTCTTGGCTCCTCAAATACGCCTGGCAATGTGGCAAACTACATGGGTCAAATGGCCACAGCCATGGGTAAACTTGGGACTCTTGAGGGGTTTATTCGCCAGGCTGACAATCTACGACAACAAACACTGCAACAAATGCATCGGATATTGACAACTCGTCAGTCGGCTCGTGCACTTCTTGCAATCCATGATTACTTCTCCAGATTACGAGCCCTTAGTTCCCTCTGGCTAGCTCGTCCAAAAGAGTGA 999 47.15 MADGSPRTDISTDADTDDKNQRLDMALRNAAMASDSSDRTKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISGSGDQAHSMAGNGAMAFDVEYARWLEEQNKQINELRAAVNSHASDTELRMVVDGVLLHYDEVFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLANQLEPLTEQQLLGISNLQQSSQQTEDALSQGMEALQQSLAETLSNGSLGSSNTPGNVANYMGQMATAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPKE 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39068829 39075671 + Sed0003305.3 Sed04g2664 711267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2664 332 Coils Coil 123 143 - -
Sed04g2664 332 MobiDBLite consensus disorder prediction 1 48 - -
Sed04g2664 332 ProSiteProfiles DOG1 domain profile. 112 329 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed04g2664 332 FunFam BZIP family transcription factor 46 95 - -
Sed04g2664 332 Coils Coil 66 93 - -
Sed04g2664 332 MobiDBLite consensus disorder prediction 10 24 - -
Sed04g2664 332 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 45 89 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g2664 332 SMART brlzneu 43 106 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g2664 332 Pfam bZIP transcription factor 47 87 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g2664 332 PANTHER TRANSCRIPTION FACTOR TGA9 24 332 - -
Sed04g2664 332 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 50 65 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g2664 332 SUPERFAMILY Leucine zipper domain 47 90 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g2664 332 Gene3D - 46 95 - -
Sed04g2664 332 Pfam Seed dormancy control 129 204 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2664 Sed-Chr4:39068829 Sed04g2666 Sed-Chr4:39068829 6.20E-168 dispersed
Sed04g2663 Sed-Chr4:39068829 Sed04g2664 Sed-Chr4:39068829 1.10E-167 tandem
Sed04g2664 Sed-Chr4:39068829 Sed04g2665 Sed-Chr4:39068829 6.20E-168 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38271 PF14144 DOG1 4.10E-32 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2664 K14431 - csv:101216885 584.719