Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2668 ATGGATCCATTTCCCCAAGAACTCGACGAACAAGTATGCAAATCCCAGAAATTTGAAACAGAAGAGGAGGAAGATGAAGACGACGATGATGGCGAGCAAGACGACTGGGACGACTGGAATGCAGACGAGGAAGAAGGCGAAGAGGAATTTGAATCGAGTTTTCTGTGTCTGTTCTGCAACTCCAAGTTCAGTCACTGCGATACGCTGTTCAATCACTGCAACTCGGCCCACAATTTCGATTTCCACGCCATTAGGACGGCTTTGGGTTTAGACTTTTATGCTTCCTTTAAGATTATCAACTACATACGATCTCAGGTAGCAGAAAATAAGTGTTGGAACTGTGGTCTGTCTTGTCAATCAAGCCAGGATTTACAGAACCATTTACACAAAGCAGTCAATCTCAATGAAATCAAGGCTCTTTGGAATGATGATAAATATCTAAAACCCTTCAGGCAAGACGATCCCCTTTTGTACAGTTTTGCAGAAGACGAAGAGGATGATGACATTTTGCTTATCAGCAACAATCTTCAAAGGAATACAGATACTGATGGAGACCATTGCAATGTGGATGAAATGCTTAAAGTAAATGGAATGGAAGATTGTGGTTCCATTTCACATGGTAATTTGAATACTCCCAGCAACTTGGAAGCCATGATTGAGAATGCCGCGAAAGCCACCGAGACTTTGGGATTGAATGATAAGATGGAGGAAGACAATCAATTAAAAATAGCCACAGGAAAGTTTTATGCAAATGACATCAAGAATGTAAATGAAAGCTACTTTGGTTCATATAGCTCTTTTGGCATTCACAGAGAGATGTTAAGTGACAAGGCCAGAACAGAATCGTATATGCAAGCTATTTTGCAAAACCCATCTCTTTTCCACAATGCAGTTGTGATGGACGTAGGTTGTGGAACAGGCATACTTAGTCTCTTTTCTGCAAAAGCGGGTGCATCAAGAGTTATTGCAGTTGAAGCAAGTGAAAAGATGGCAGCAGTGGCCACCCAAATTGCAAAAGACAATGGCCTCTGGCGGAATAGGAAACAGTCTGGAGATTGTGGCATTTCAAGTGGGACTATAGAAGTGGTTCATGGTATGGTAGAAGAACTTGATAAGAACCTAGAGATTCAGCCTCACAGTGTTGACGTATTATTGAGCGAATGGATGGGCTATTGTTTGCTGTATGAGTCTATGCTCAGCTCAGTACTCTTTGCAAGGGATCGGTGGTTGAAGCCTGGAGGTGCCATCTTACCAGATACTGCCACAATTCTTGTTGCAGGATTTGGAGTTGGTGGAACTAGTCTTCCATTTTGGGAAAATGTGTATGGTTTCAACATGTCTTGTGTAGGGAAGGAACTTGTAAATGATGCTGCCAAAGGTCCCATTGTTGACGTTGTGGATGCGAAGGATTTAGTAACTAGTGCTGCAATTCTTCATGCTTTTGATCTAGCCAATATGCATCCTGACGAAGTAGACTTCACTGCAAGTACCGAGTTGGAACCGAATTTACATTCTCCTTCAAGCGACTCAGAAAACGTTGAAGTCAAAACATCTTGGTGTCATGGAGTTGTCTTATGGTTTGAAACTGGTTTTACAAGAAGATTTTGCAAAGAATCACCTGCTGTTCTTTCTACATCCCCATACACTCCCAAAACTCACTGGTCTCAAACCATACTAACCTTTAGAGAACCAATTTCTATAACGTCTGGAAAACTTGCCTGCGACGAATCAGCGCCAGTTGGTACCGAGGCCTCACCTGCTGTCAAAGTTCATTTGCGCCTTAGCATTGTCCGTGCACCCGAACATCGAAGCATTGACATTTCACTGGAGACTACCGGGATTGCTGATGATGGTCGGAAGCGCCACTGGCCCATACAACTTTTCACTCTAAGATAG 1896 42.83 MDPFPQELDEQVCKSQKFETEEEEDEDDDDGEQDDWDDWNADEEEGEEEFESSFLCLFCNSKFSHCDTLFNHCNSAHNFDFHAIRTALGLDFYASFKIINYIRSQVAENKCWNCGLSCQSSQDLQNHLHKAVNLNEIKALWNDDKYLKPFRQDDPLLYSFAEDEEDDDILLISNNLQRNTDTDGDHCNVDEMLKVNGMEDCGSISHGNLNTPSNLEAMIENAAKATETLGLNDKMEEDNQLKIATGKFYANDIKNVNESYFGSYSSFGIHREMLSDKARTESYMQAILQNPSLFHNAVVMDVGCGTGILSLFSAKAGASRVIAVEASEKMAAVATQIAKDNGLWRNRKQSGDCGISSGTIEVVHGMVEELDKNLEIQPHSVDVLLSEWMGYCLLYESMLSSVLFARDRWLKPGGAILPDTATILVAGFGVGGTSLPFWENVYGFNMSCVGKELVNDAAKGPIVDVVDAKDLVTSAAILHAFDLANMHPDEVDFTASTELEPNLHSPSSDSENVEVKTSWCHGVVLWFETGFTRRFCKESPAVLSTSPYTPKTHWSQTILTFREPISITSGKLACDESAPVGTEASPAVKVHLRLSIVRAPEHRSIDISLETTGIADDGRKRHWPIQLFTLR 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39081063 39086366 + Sed0017460.1 Sed04g2668 711271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2668 631 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 257 610 IPR025799 GO:0016274(InterPro)|GO:0018216(InterPro)
Sed04g2668 631 CDD AdoMet_MTases 299 417 - -
Sed04g2668 631 MobiDBLite consensus disorder prediction 1 43 - -
Sed04g2668 631 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 263 572 IPR029063 -
Sed04g2668 631 Gene3D Vaccinia Virus protein VP39 248 418 IPR029063 -
Sed04g2668 631 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 249 612 IPR025799 GO:0005634(PANTHER)|GO:0016274(InterPro)|GO:0018216(InterPro)
Sed04g2668 631 SUPERFAMILY beta-beta-alpha zinc fingers 32 168 IPR036236 -
Sed04g2668 631 FunFam Protein arginine N-methyltransferase 6 253 418 - -
Sed04g2668 631 MobiDBLite consensus disorder prediction 20 43 - -
Sed04g2668 631 ProSitePatterns Zinc finger C2H2 type domain signature. 56 77 IPR013087 -
Sed04g2668 631 Pfam Arginine methyltransferase oligomerization subdomain 420 571 - -
Sed04g2668 631 Pfam Methyltransferase domain 299 414 IPR041698 -
Sed04g2668 631 Gene3D - 421 624 - -
Sed04g2668 631 Pfam C2H2 type zinc-finger (2 copies) 56 130 IPR041661 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2668 Sed-Chr4:39081063 Sed08g0865 Sed-Chr8:7081246 1.60E-55 dispersed
Sed04g2668 Sed-Chr4:39081063 Sed08g0711 Sed-Chr8:5187053 8.50E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2668 K11436 - csv:101215999 915.22