Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g2669 | ATGGAAAACGTGGAGCAAATGAAGCCGTCAGCTAAAAATAATTGCCTTACGGATGGCGCAACAGACACTGTTGAAGTTCAATTCTCACAATTGTGTCAGAATGGTTTACGTCTGGATGAGAATTGTTGTAATCAAGCGTTGAAGTTATTTAGAGAAACCAAGCACCTGTTGGTGGCGAATATATCAGCAATTGGAAGTGGAATTCCTGAAGAAGCCGAGCGTTTTTGGTCTGCCTTCGTTTTATATTCTGTGAAGAGGCTGAGAGATAAGAATCCAGAAAGTTCACATCAGGGACCGGAGAACAGTAGCTTCACTCTTTGCTACATATTGAGAGTTTGCAAGCTGAATATTGTAGAATTTTTTAAAGAGCTGCCTCAGTTTGTTGTTAAAGCTGGTCCAGTATTAAGTAATCTATATGGTGCTGATTGGGAAAATAGACTAGAGGCAAAAGAGTTGCAGGCTAACTTTGTGCATTTGAGCCTCTTAAGCAAGTACTATAAGCGTGTCTACCGAGAATTCTTCTACACCAGTGATGCTAATGTTGATATGCAGCTAGATATGTCTTGCCCTACTGGTTACTTGTCTGATTACCATCGTTTTGGATGGTTGTTGTTTTTGGCACTTCGTGTACATGCTTTCAGTCGTTTTAAGGACTTGGTGACTTGCACTAATGGTTTGGTTTCCATTTTGGCTATTTTAATTCTTCACGTTCCCGTTTGTTACAGAAACTTCAACATTCTTGACTCTGAACGTTTTGTTAAGAAAGGTGGCCCAGGAGTAGACCTGCTTGGGTCACTTTGCAATGTCTATGACACCTCAGAGGAAGAACTGAGGGAAGTAATGGAGAAGGCAAATAGTTTGATAGAAGACATTTTGAAGAAGAAGCCTCGTTTGGCTTCTGAGTGTCATAGTAAAAGCTTGGAGAATATCGACACTAATGGTTTGATATACTTTGAAGACTTAATGAAGGAGTCATCTCTTTCTTCCAGCTTAGAAATTTTAGAGAAGGACTATGAAGATGCAATTTGTAATAAAGGTGAGCTTGATGAGCGCGTATTTGTTAATGATGAGGACAGTTTACTTGGGTCAGGTAGCTTGTCAGCAGGTGCTGTTACGATAAGTGGCATCAAGAGGAAGGTTGACTCAATGTGCTCACCTTCAAGGACTATAACAAGTCCAATGTCGCCAATTCGCTCACCTACTTCACATGCCAATGTCACTCTTATCAGTGGCAACGCAAAACTTGCTGCCACCCCTGTAAGCACAGCTATGACAACAGCAAAATGGCTCAGAAATGTTATTTCTCCACTCCCAGCAAAACCTTCAACAGAGATGGAGCGTTTTTTGTCTTCATGTGATAGAGACGTGACTAATGATGTAGTTCGTAGGGCACATATAATATTAGAGGCTATCTTTCCAAATAGTACTTTAGGCGCTGGAAATTTACAAAGTGCAAACCTCATGGATAACATCTGGGCAGAACAACGACGACTAGAAGCACTAAAATTATATTATAGAGTTCTGGAAGCAATGTGCAGAGCAGAGTCTCAGATGCTGCATGTAACTAATTTGACCTCTTTGCTAACTAATGAGAGGTTCCATAGATGTATGCTGGCTTGTTCTTCCGAATTGGTTTTGGCAACACATAAAACCGTTACAATGTTGTTTCCTGCAGTATTGGAGAGAACTGGCATTACCGCTTTTGACCTTAGTAAGGTGATAGAAAGTTTCATTAGACATGAAGAATCACTTCCTAGAGAATTGAGGCGACATCTTAATTCCTTGGAAGAACGGCTATTAGAGAGCATGGTATGGGAAAAAGGTTCATCAATGTATAACTCCCTGATTGTCGCTAAACCTGCCCTTGCTAATGAAATAAACCGTCTGGGTTTATTAGCTGAACCCATGCCATCTTTGGATGCAATTGCTGTTCAAATTAACTTTTCTGGTACTGGGGTATCAACCATGCCTACTTTGCACAAGCATGAGAGTTTGCCAGGTAGTAATGGGGATATTAGGTCACCAAAAAGATTGTGCACAGATTTAAGAAGTGTGCTAGTGGAACGAAATTCCTTTACTTCTCCGGTCAAGGACCGTCTCTTGGCTTTAAGTAATATCAAGTCTAAGCTTCTGCCACCTCCTTTACAGTCAGCATTTGCAAGCCCTACTCGGCCTATTCCTGGAGGTGGTGGAGAAACGTGCGCTGAAACTGGAATTAACATATTTTTTAGCAAGATTATCAAGTTAGCTGCTGTAAGAGTAAATGGAATGGTTGAAAAGTTGCAGTTATCTCATCAGATCAGGGAGAATGTCTACTGCCTTTTCCAACAAATACTCAGTCAAAAGGCATCATTGTTATTTAATCGTCACATTGACCAAATCATCCTTTGTTGTTTCTATGGTGTTGCAAAGATATCTCAATTGAGCCTCACGTTTAGGGAAATCATTTACAACTACAGGAAGCAACCACAATGTAAACCACAAGTCTTTCGCAACGTGTTTGTTGATTGGTCTTCAACACGTCGGAATGGGAGATCAGGGCAGGATCATGTTGATATAATTACGTTCTACAATGAAATGTTTATTCCTTCGGTAAAACCTTTGCTTGTTGAGATTGGCCCGGCTGGATCAACCGTGAAAAATGACAGGGTTCCTCAAGTCAACAACAATAGTGACGCACCCTGTCCTGGATCACCTAAGATATCTCCTTTTCCCAGTCTTCCCGACATGTCTCCAAAGAAAGTATCTTCAGCACATAATGTCTATGTCTCTCCATTAAGGTCATCAAAGATGGATGCGTTGATTTCTCATAGTTCAAAGAGCTACTACGCTTGCGTTGGAGAGAGCACTCATGCGTTTCAAAGCCCTTCAAAAGACCTTACCGCCATAAACAACCGTTTGAATGGAACACGGAAACTCCGAGGCACGCTAAATTTTGACGACGCAGACGTTGGTTTGGTCAGTGATTCGCTGGTGGCTAACAGCCTTTACCTTCAAAATGGAAGTTGTGGATCATCTTCAGGTGCAGCTATTAAATCTGAACAACCTGATTCTTAA | 3057 | 41.18 | MENVEQMKPSAKNNCLTDGATDTVEVQFSQLCQNGLRLDENCCNQALKLFRETKHLLVANISAIGSGIPEEAERFWSAFVLYSVKRLRDKNPESSHQGPENSSFTLCYILRVCKLNIVEFFKELPQFVVKAGPVLSNLYGADWENRLEAKELQANFVHLSLLSKYYKRVYREFFYTSDANVDMQLDMSCPTGYLSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHVPVCYRNFNILDSERFVKKGGPGVDLLGSLCNVYDTSEEELREVMEKANSLIEDILKKKPRLASECHSKSLENIDTNGLIYFEDLMKESSLSSSLEILEKDYEDAICNKGELDERVFVNDEDSLLGSGSLSAGAVTISGIKRKVDSMCSPSRTITSPMSPIRSPTSHANVTLISGNAKLAATPVSTAMTTAKWLRNVISPLPAKPSTEMERFLSSCDRDVTNDVVRRAHIILEAIFPNSTLGAGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSSELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPALANEINRLGLLAEPMPSLDAIAVQINFSGTGVSTMPTLHKHESLPGSNGDIRSPKRLCTDLRSVLVERNSFTSPVKDRLLALSNIKSKLLPPPLQSAFASPTRPIPGGGGETCAETGINIFFSKIIKLAAVRVNGMVEKLQLSHQIRENVYCLFQQILSQKASLLFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRNVFVDWSSTRRNGRSGQDHVDIITFYNEMFIPSVKPLLVEIGPAGSTVKNDRVPQVNNNSDAPCPGSPKISPFPSLPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNGTRKLRGTLNFDDADVGLVSDSLVANSLYLQNGSCGSSSGAAIKSEQPDS | 1018 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 39089921 | 39099569 | - | Sed0027944.1 | Sed04g2669 | 711272 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g2669 | 1018 | SMART | DUF3452_2 | 87 | 236 | IPR024599 | - | |
Sed04g2669 | 1018 | Gene3D | - | 197 | 355 | - | - | |
Sed04g2669 | 1018 | SUPERFAMILY | Cyclin-like | 426 | 617 | IPR036915 | - | |
Sed04g2669 | 1018 | Pfam | Domain of unknown function (DUF3452) | 100 | 236 | IPR024599 | - | |
Sed04g2669 | 1018 | PANTHER | RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED | 11 | 1015 | IPR028309 | GO:0000785(PANTHER)|GO:0000977(PANTHER)|GO:0005667(PANTHER)|GO:0006357(InterPro)|GO:0030154(PANTHER)|GO:0051726(InterPro)|GO:2000134(PANTHER) | |
Sed04g2669 | 1018 | Gene3D | - | 421 | 605 | - | - | |
Sed04g2669 | 1018 | MobiDBLite | consensus disorder prediction | 881 | 912 | - | - | |
Sed04g2669 | 1018 | FunFam | Retinoblastoma-related protein 1 | 421 | 605 | - | - | |
Sed04g2669 | 1018 | FunFam | Retinoblastoma-related protein 1 | 689 | 899 | - | - | |
Sed04g2669 | 1018 | Pfam | Retinoblastoma-associated protein A domain | 418 | 615 | IPR002720 | GO:0005634(InterPro)|GO:0051726(InterPro) | |
Sed04g2669 | 1018 | SMART | RB_A_2 | 418 | 615 | IPR002720 | GO:0005634(InterPro)|GO:0051726(InterPro) | |
Sed04g2669 | 1018 | FunFam | Retinoblastoma-related protein 1 | 197 | 355 | - | - | |
Sed04g2669 | 1018 | SUPERFAMILY | Cyclin-like | 737 | 906 | IPR036915 | - | |
Sed04g2669 | 1018 | Gene3D | - | 702 | 905 | - | - | |
Sed04g2669 | 1018 | Pfam | Retinoblastoma-associated protein B domain | 739 | 866 | IPR002719 | GO:0005634(InterPro)|GO:0051726(InterPro) | |
Sed04g2669 | 1018 | Coils | Coil | 270 | 294 | - | - | |
Sed04g2669 | 1018 | MobiDBLite | consensus disorder prediction | 881 | 896 | - | - | |
Sed04g2669 | 1018 | Coils | Coil | 331 | 351 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g2669 | Sed-Chr4:39089921 | Sed07g2325 | Sed-Chr7:39125607 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38274 | PF01858 | RB_A | 1.30E-64 | CL0065 | Sed | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g2669 | K04681 | - | csv:101219810 | 1832.77 |