Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2669 ATGGAAAACGTGGAGCAAATGAAGCCGTCAGCTAAAAATAATTGCCTTACGGATGGCGCAACAGACACTGTTGAAGTTCAATTCTCACAATTGTGTCAGAATGGTTTACGTCTGGATGAGAATTGTTGTAATCAAGCGTTGAAGTTATTTAGAGAAACCAAGCACCTGTTGGTGGCGAATATATCAGCAATTGGAAGTGGAATTCCTGAAGAAGCCGAGCGTTTTTGGTCTGCCTTCGTTTTATATTCTGTGAAGAGGCTGAGAGATAAGAATCCAGAAAGTTCACATCAGGGACCGGAGAACAGTAGCTTCACTCTTTGCTACATATTGAGAGTTTGCAAGCTGAATATTGTAGAATTTTTTAAAGAGCTGCCTCAGTTTGTTGTTAAAGCTGGTCCAGTATTAAGTAATCTATATGGTGCTGATTGGGAAAATAGACTAGAGGCAAAAGAGTTGCAGGCTAACTTTGTGCATTTGAGCCTCTTAAGCAAGTACTATAAGCGTGTCTACCGAGAATTCTTCTACACCAGTGATGCTAATGTTGATATGCAGCTAGATATGTCTTGCCCTACTGGTTACTTGTCTGATTACCATCGTTTTGGATGGTTGTTGTTTTTGGCACTTCGTGTACATGCTTTCAGTCGTTTTAAGGACTTGGTGACTTGCACTAATGGTTTGGTTTCCATTTTGGCTATTTTAATTCTTCACGTTCCCGTTTGTTACAGAAACTTCAACATTCTTGACTCTGAACGTTTTGTTAAGAAAGGTGGCCCAGGAGTAGACCTGCTTGGGTCACTTTGCAATGTCTATGACACCTCAGAGGAAGAACTGAGGGAAGTAATGGAGAAGGCAAATAGTTTGATAGAAGACATTTTGAAGAAGAAGCCTCGTTTGGCTTCTGAGTGTCATAGTAAAAGCTTGGAGAATATCGACACTAATGGTTTGATATACTTTGAAGACTTAATGAAGGAGTCATCTCTTTCTTCCAGCTTAGAAATTTTAGAGAAGGACTATGAAGATGCAATTTGTAATAAAGGTGAGCTTGATGAGCGCGTATTTGTTAATGATGAGGACAGTTTACTTGGGTCAGGTAGCTTGTCAGCAGGTGCTGTTACGATAAGTGGCATCAAGAGGAAGGTTGACTCAATGTGCTCACCTTCAAGGACTATAACAAGTCCAATGTCGCCAATTCGCTCACCTACTTCACATGCCAATGTCACTCTTATCAGTGGCAACGCAAAACTTGCTGCCACCCCTGTAAGCACAGCTATGACAACAGCAAAATGGCTCAGAAATGTTATTTCTCCACTCCCAGCAAAACCTTCAACAGAGATGGAGCGTTTTTTGTCTTCATGTGATAGAGACGTGACTAATGATGTAGTTCGTAGGGCACATATAATATTAGAGGCTATCTTTCCAAATAGTACTTTAGGCGCTGGAAATTTACAAAGTGCAAACCTCATGGATAACATCTGGGCAGAACAACGACGACTAGAAGCACTAAAATTATATTATAGAGTTCTGGAAGCAATGTGCAGAGCAGAGTCTCAGATGCTGCATGTAACTAATTTGACCTCTTTGCTAACTAATGAGAGGTTCCATAGATGTATGCTGGCTTGTTCTTCCGAATTGGTTTTGGCAACACATAAAACCGTTACAATGTTGTTTCCTGCAGTATTGGAGAGAACTGGCATTACCGCTTTTGACCTTAGTAAGGTGATAGAAAGTTTCATTAGACATGAAGAATCACTTCCTAGAGAATTGAGGCGACATCTTAATTCCTTGGAAGAACGGCTATTAGAGAGCATGGTATGGGAAAAAGGTTCATCAATGTATAACTCCCTGATTGTCGCTAAACCTGCCCTTGCTAATGAAATAAACCGTCTGGGTTTATTAGCTGAACCCATGCCATCTTTGGATGCAATTGCTGTTCAAATTAACTTTTCTGGTACTGGGGTATCAACCATGCCTACTTTGCACAAGCATGAGAGTTTGCCAGGTAGTAATGGGGATATTAGGTCACCAAAAAGATTGTGCACAGATTTAAGAAGTGTGCTAGTGGAACGAAATTCCTTTACTTCTCCGGTCAAGGACCGTCTCTTGGCTTTAAGTAATATCAAGTCTAAGCTTCTGCCACCTCCTTTACAGTCAGCATTTGCAAGCCCTACTCGGCCTATTCCTGGAGGTGGTGGAGAAACGTGCGCTGAAACTGGAATTAACATATTTTTTAGCAAGATTATCAAGTTAGCTGCTGTAAGAGTAAATGGAATGGTTGAAAAGTTGCAGTTATCTCATCAGATCAGGGAGAATGTCTACTGCCTTTTCCAACAAATACTCAGTCAAAAGGCATCATTGTTATTTAATCGTCACATTGACCAAATCATCCTTTGTTGTTTCTATGGTGTTGCAAAGATATCTCAATTGAGCCTCACGTTTAGGGAAATCATTTACAACTACAGGAAGCAACCACAATGTAAACCACAAGTCTTTCGCAACGTGTTTGTTGATTGGTCTTCAACACGTCGGAATGGGAGATCAGGGCAGGATCATGTTGATATAATTACGTTCTACAATGAAATGTTTATTCCTTCGGTAAAACCTTTGCTTGTTGAGATTGGCCCGGCTGGATCAACCGTGAAAAATGACAGGGTTCCTCAAGTCAACAACAATAGTGACGCACCCTGTCCTGGATCACCTAAGATATCTCCTTTTCCCAGTCTTCCCGACATGTCTCCAAAGAAAGTATCTTCAGCACATAATGTCTATGTCTCTCCATTAAGGTCATCAAAGATGGATGCGTTGATTTCTCATAGTTCAAAGAGCTACTACGCTTGCGTTGGAGAGAGCACTCATGCGTTTCAAAGCCCTTCAAAAGACCTTACCGCCATAAACAACCGTTTGAATGGAACACGGAAACTCCGAGGCACGCTAAATTTTGACGACGCAGACGTTGGTTTGGTCAGTGATTCGCTGGTGGCTAACAGCCTTTACCTTCAAAATGGAAGTTGTGGATCATCTTCAGGTGCAGCTATTAAATCTGAACAACCTGATTCTTAA 3057 41.18 MENVEQMKPSAKNNCLTDGATDTVEVQFSQLCQNGLRLDENCCNQALKLFRETKHLLVANISAIGSGIPEEAERFWSAFVLYSVKRLRDKNPESSHQGPENSSFTLCYILRVCKLNIVEFFKELPQFVVKAGPVLSNLYGADWENRLEAKELQANFVHLSLLSKYYKRVYREFFYTSDANVDMQLDMSCPTGYLSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHVPVCYRNFNILDSERFVKKGGPGVDLLGSLCNVYDTSEEELREVMEKANSLIEDILKKKPRLASECHSKSLENIDTNGLIYFEDLMKESSLSSSLEILEKDYEDAICNKGELDERVFVNDEDSLLGSGSLSAGAVTISGIKRKVDSMCSPSRTITSPMSPIRSPTSHANVTLISGNAKLAATPVSTAMTTAKWLRNVISPLPAKPSTEMERFLSSCDRDVTNDVVRRAHIILEAIFPNSTLGAGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSSELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPALANEINRLGLLAEPMPSLDAIAVQINFSGTGVSTMPTLHKHESLPGSNGDIRSPKRLCTDLRSVLVERNSFTSPVKDRLLALSNIKSKLLPPPLQSAFASPTRPIPGGGGETCAETGINIFFSKIIKLAAVRVNGMVEKLQLSHQIRENVYCLFQQILSQKASLLFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRNVFVDWSSTRRNGRSGQDHVDIITFYNEMFIPSVKPLLVEIGPAGSTVKNDRVPQVNNNSDAPCPGSPKISPFPSLPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNGTRKLRGTLNFDDADVGLVSDSLVANSLYLQNGSCGSSSGAAIKSEQPDS 1018
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39089921 39099569 - Sed0027944.1 Sed04g2669 711272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2669 1018 SMART DUF3452_2 87 236 IPR024599 -
Sed04g2669 1018 Gene3D - 197 355 - -
Sed04g2669 1018 SUPERFAMILY Cyclin-like 426 617 IPR036915 -
Sed04g2669 1018 Pfam Domain of unknown function (DUF3452) 100 236 IPR024599 -
Sed04g2669 1018 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 11 1015 IPR028309 GO:0000785(PANTHER)|GO:0000977(PANTHER)|GO:0005667(PANTHER)|GO:0006357(InterPro)|GO:0030154(PANTHER)|GO:0051726(InterPro)|GO:2000134(PANTHER)
Sed04g2669 1018 Gene3D - 421 605 - -
Sed04g2669 1018 MobiDBLite consensus disorder prediction 881 912 - -
Sed04g2669 1018 FunFam Retinoblastoma-related protein 1 421 605 - -
Sed04g2669 1018 FunFam Retinoblastoma-related protein 1 689 899 - -
Sed04g2669 1018 Pfam Retinoblastoma-associated protein A domain 418 615 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
Sed04g2669 1018 SMART RB_A_2 418 615 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
Sed04g2669 1018 FunFam Retinoblastoma-related protein 1 197 355 - -
Sed04g2669 1018 SUPERFAMILY Cyclin-like 737 906 IPR036915 -
Sed04g2669 1018 Gene3D - 702 905 - -
Sed04g2669 1018 Pfam Retinoblastoma-associated protein B domain 739 866 IPR002719 GO:0005634(InterPro)|GO:0051726(InterPro)
Sed04g2669 1018 Coils Coil 270 294 - -
Sed04g2669 1018 MobiDBLite consensus disorder prediction 881 896 - -
Sed04g2669 1018 Coils Coil 331 351 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2669 Sed-Chr4:39089921 Sed07g2325 Sed-Chr7:39125607 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38274 PF01858 RB_A 1.30E-64 CL0065 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2669 K04681 - csv:101219810 1832.77