Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2680 ATGGCAAAATTAAGCTTGAGCTGCGGCAATAGCTTTCTTGAGAATTCAAAACCTTACTTTGCCATGATATCGTTGCAATTTGGATATGCTGGCATGAACATCATCTCTAAAGTCTCTCTTACTAGAGGCATGAGCCATTATGTCCTCGTCGTTTATCGACATGTCTTCGCTACCGCTTCTATTGCCCCGTTCGCTCTCTTCTTCGAACGGAGAGGGCAGCCAAGGATCACACTCAAAGTGTTCATTCAAATATTTATGTTGGCTTTGTTTGGCCCGGTTATCGATCAAAATTTCTATTATGCTGGGCTAAAATATACTACACCAACTTTCTCTTGTGCCATGAGCAACATGCTGCCAGCAATGACATTTGTGATGGCTGTGATCTTCAGGATGGAAAAATTGGAGATAAAGAAAGTGAGATGCCAAGCAAAAATATTGGGAACTTTAGTGACAGTGGGAGGAGCATTGGTGATGAGTTTATACAAAGGGCCACTTGTTGAAATGGGTTGGTCTAAACATTATTCTAATGTTTCAACAACAAAATCTTATGAACCCTCTCATTCTGATTCTTCCAACAAAGATTGGTTCAAAGGCTCCATTTTTCTCATAATTGCCACTCTTGCTTGGTCTTCCCTTTTTGTCTTGCAGAATCAGGCACTAAAGACATACAAAGACCATCAATTTACTCTCACCACACTCGTGTGTTTTGTTGGGACTTTGCAAGCCACAGCTGTGACTATAGTAGCTGAGCACAAAGCCTCTGTTTGGAGAATTGGTTGGGATATGAACCTCCTTGCTTCTGCCTATGGGGGAATTGTGACATCAAGTATTTCATACTATGTACAAGGGCTGGTGATGAAAAAGAGAGGACCTGTATTTGCAACTGCATTTAGCCCTTTGATGATGATCATTGTAGCCATTATGGACTCTTTCATCCTTGCTGAGAGAATTTTTCTTGGGGAAATAATAGGATCCATATTAATAGTGTTTGGGCTATATTCTGTCCTTTGGGGGAAGCACAAGGACATTTTGGAGACCAAAATTGCTGCTGATGCTGATCAAATGCCACAAGTAATTAAGCCTTCTTCTCAACCAAATAATGATAATAATAATAATAATAATAATAATATTGTAACTCTTGAAGCTAATAAGCTTTCCAATTCACTTTTTATTTCCATGTCTGACCCTGAAAACCCCATCAAACCCAACCAAATCCCAAGAGAATGA 1227 39.69 MAKLSLSCGNSFLENSKPYFAMISLQFGYAGMNIISKVSLTRGMSHYVLVVYRHVFATASIAPFALFFERRGQPRITLKVFIQIFMLALFGPVIDQNFYYAGLKYTTPTFSCAMSNMLPAMTFVMAVIFRMEKLEIKKVRCQAKILGTLVTVGGALVMSLYKGPLVEMGWSKHYSNVSTTKSYEPSHSDSSNKDWFKGSIFLIIATLAWSSLFVLQNQALKTYKDHQFTLTTLVCFVGTLQATAVTIVAEHKASVWRIGWDMNLLASAYGGIVTSSISYYVQGLVMKKRGPVFATAFSPLMMIIVAIMDSFILAERIFLGEIIGSILIVFGLYSVLWGKHKDILETKIAADADQMPQVIKPSSQPNNDNNNNNNNNIVTLEANKLSNSLFISMSDPENPIKPNQIPRE 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39178975 39182995 + Sed0006404.1 Sed04g2680 711283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2680 408 Pfam EamA-like transporter family 197 336 IPR000620 GO:0016020(InterPro)
Sed04g2680 408 Pfam EamA-like transporter family 19 159 IPR000620 GO:0016020(InterPro)
Sed04g2680 408 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 162 - -
Sed04g2680 408 SUPERFAMILY Multidrug resistance efflux transporter EmrE 260 340 - -
Sed04g2680 408 PANTHER WAT1-RELATED PROTEIN 20 359 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3761 Sed-Chr1:66707520 Sed04g2680 Sed-Chr4:39178975 4.80E-46 dispersed
Sed03g3111 Sed-Chr3:47810990 Sed04g2680 Sed-Chr4:39178975 1.40E-67 dispersed
Sed04g2680 Sed-Chr4:39178975 Sed14g0046 Sed-Chr14:593769 4.10E-121 dispersed
Sed04g2680 Sed-Chr4:39178975 Sed07g2342 Sed-Chr7:39296968 2.60E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2680 - - - 0.0