Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g2683 | ATGAGGAAGAAGCTCGATACCCGCTTTCCTGCTGCTCGAATAAAAAAGATAATGCAAGCAGATGAAGATGTTGGAAAGATAGCAATGGCAGTGCCCGTTTTAGTTTCTAAAGCATTGGAACTATTCTTGCAAGACCTCTGTGATCGTACATATGAGATAACTCTACAAAGAGGAGCCAAGACAATGAACTCATTGCACCTAAAGCACTGTGTACAAAGCTATAGTGTCTTCGATTTTCTGAGAGATATTGTTAGTCGAGTTCCAGATTATGGTCATGGTCATTCTGATGGTACTGTTGATGATAGAAAGAGGAGGAAACCCCTTGGTGATGAGGGAAATGATAATGATGAGTTGAAGAAGAGCAGAATGCATGAGACGAGCCATGTCAGCACTGGTAGGGGAAGAGGACGGGGGCGAGGAAGGGGTCGTGGACGGCCTGCTCGAATAGCCGAAAGGGACCACATTCAACCTAACCCCGAAGACGACCCTTGCACATCTACAGAAAACAGGAGCAAGATCCCCAACCCAGATGTGCACATGGAGCACCACATTGACACCAATGAAACATCAAAAGAAGTCAGTGATGCCAATCAAGCAATCCAAAACTTCGATCTTAACGCCGACGTCAATACTAGCGAAGAAACCAAGACTGTAGCAACAGCACCACCACCCAATGTGCCCGTCGAATCGACCGGGCCAACTACTACCGAGTCTGAGGCTAAAGCTTCTGATGAATTCCCTGCCTGGCCTCTTTCAGACGTGGACAAAATGACAATTGACCCTCTCCAATATGCACATCTCAGCACAAGAGCAGATGAGGAAGAAGAAGATTATGATGAAGAGTAA | 846 | 46.1 | MRKKLDTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSRVPDYGHGHSDGTVDDRKRRKPLGDEGNDNDELKKSRMHETSHVSTGRGRGRGRGRGRGRPARIAERDHIQPNPEDDPCTSTENRSKIPNPDVHMEHHIDTNETSKEVSDANQAIQNFDLNADVNTSEETKTVATAPPPNVPVESTGPTTTESEAKASDEFPAWPLSDVDKMTIDPLQYAHLSTRADEEEEDYDEE | 281 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 39203260 | 39207332 | - | Sed0016042.1 | Sed04g2683 | 711286 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g2683 | 281 | MobiDBLite | consensus disorder prediction | 90 | 178 | - | - | |
Sed04g2683 | 281 | Gene3D | Histone, subunit A | 1 | 86 | IPR009072 | GO:0046982(InterPro) | |
Sed04g2683 | 281 | MobiDBLite | consensus disorder prediction | 144 | 159 | - | - | |
Sed04g2683 | 281 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 4 | 181 | IPR050568 | GO:0001046(PANTHER)|GO:0005634(PANTHER)|GO:0016251(PANTHER) | |
Sed04g2683 | 281 | SUPERFAMILY | Histone-fold | 4 | 89 | IPR009072 | GO:0046982(InterPro) | |
Sed04g2683 | 281 | MobiDBLite | consensus disorder prediction | 90 | 132 | - | - | |
Sed04g2683 | 281 | MobiDBLite | consensus disorder prediction | 206 | 249 | - | - | |
Sed04g2683 | 281 | FunFam | dr1-associated corepressor homolog | 1 | 86 | - | - | |
Sed04g2683 | 281 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 8 | 71 | IPR003958 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g2683 | Sed-Chr4:39203260 | Sed07g2346 | Sed-Chr7:39328776 | 1.10E-112 | dispersed | |
Sed05g1200 | Sed-Chr5:18835636 | Sed04g2683 | Sed-Chr4:39203260 | 2.60E-44 | transposed | |
Sed04g2683 | Sed-Chr4:39203260 | Sed07g2345 | Sed-Chr7:39328776 | 4.40E-114 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38275 | PF00808 | CBFD_NFYB_HMF | 2.10E-19 | CL0012 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g2683 | K21752 | - | csv:101209714 | 440.269 |