Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2683 ATGAGGAAGAAGCTCGATACCCGCTTTCCTGCTGCTCGAATAAAAAAGATAATGCAAGCAGATGAAGATGTTGGAAAGATAGCAATGGCAGTGCCCGTTTTAGTTTCTAAAGCATTGGAACTATTCTTGCAAGACCTCTGTGATCGTACATATGAGATAACTCTACAAAGAGGAGCCAAGACAATGAACTCATTGCACCTAAAGCACTGTGTACAAAGCTATAGTGTCTTCGATTTTCTGAGAGATATTGTTAGTCGAGTTCCAGATTATGGTCATGGTCATTCTGATGGTACTGTTGATGATAGAAAGAGGAGGAAACCCCTTGGTGATGAGGGAAATGATAATGATGAGTTGAAGAAGAGCAGAATGCATGAGACGAGCCATGTCAGCACTGGTAGGGGAAGAGGACGGGGGCGAGGAAGGGGTCGTGGACGGCCTGCTCGAATAGCCGAAAGGGACCACATTCAACCTAACCCCGAAGACGACCCTTGCACATCTACAGAAAACAGGAGCAAGATCCCCAACCCAGATGTGCACATGGAGCACCACATTGACACCAATGAAACATCAAAAGAAGTCAGTGATGCCAATCAAGCAATCCAAAACTTCGATCTTAACGCCGACGTCAATACTAGCGAAGAAACCAAGACTGTAGCAACAGCACCACCACCCAATGTGCCCGTCGAATCGACCGGGCCAACTACTACCGAGTCTGAGGCTAAAGCTTCTGATGAATTCCCTGCCTGGCCTCTTTCAGACGTGGACAAAATGACAATTGACCCTCTCCAATATGCACATCTCAGCACAAGAGCAGATGAGGAAGAAGAAGATTATGATGAAGAGTAA 846 46.1 MRKKLDTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSRVPDYGHGHSDGTVDDRKRRKPLGDEGNDNDELKKSRMHETSHVSTGRGRGRGRGRGRGRPARIAERDHIQPNPEDDPCTSTENRSKIPNPDVHMEHHIDTNETSKEVSDANQAIQNFDLNADVNTSEETKTVATAPPPNVPVESTGPTTTESEAKASDEFPAWPLSDVDKMTIDPLQYAHLSTRADEEEEDYDEE 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39203260 39207332 - Sed0016042.1 Sed04g2683 711286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2683 281 MobiDBLite consensus disorder prediction 90 178 - -
Sed04g2683 281 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982(InterPro)
Sed04g2683 281 MobiDBLite consensus disorder prediction 144 159 - -
Sed04g2683 281 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 4 181 IPR050568 GO:0001046(PANTHER)|GO:0005634(PANTHER)|GO:0016251(PANTHER)
Sed04g2683 281 SUPERFAMILY Histone-fold 4 89 IPR009072 GO:0046982(InterPro)
Sed04g2683 281 MobiDBLite consensus disorder prediction 90 132 - -
Sed04g2683 281 MobiDBLite consensus disorder prediction 206 249 - -
Sed04g2683 281 FunFam dr1-associated corepressor homolog 1 86 - -
Sed04g2683 281 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2683 Sed-Chr4:39203260 Sed07g2346 Sed-Chr7:39328776 1.10E-112 dispersed
Sed05g1200 Sed-Chr5:18835636 Sed04g2683 Sed-Chr4:39203260 2.60E-44 transposed
Sed04g2683 Sed-Chr4:39203260 Sed07g2345 Sed-Chr7:39328776 4.40E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38275 PF00808 CBFD_NFYB_HMF 2.10E-19 CL0012 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2683 K21752 - csv:101209714 440.269