Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g2721 | ATGTCTCAGAAATCCCAGGTGATGGTTTCATTGCAATCCACTAAATCCATGCCGGTTAATTCTCGGTTCATGATTCCGCAAGCAGTTGAAGCTTCCGAAGAGCCTTATATTCGGAATGCGAAAAACTTGGAAGCTAGCTCGTTAGTTGATGGTGAAAATGGTGCTTCTGGAGATGATGTTGCCAATCGTCTTCGATACAGTATGAACAATATTGACGAGCTGAATGAGGATTCACCATATAATTGCAATGTTATAACAGTGGAACAAAGACCTTCCATGGATGATGGAGAAGATGGTTTTATGCCTTCACCTTCACCTTCACCTTCATTGTCGTCTTCACGTAGTGATCGCAGGTGGGGTGACACATCCTCCTACACGTCAAGGAAGATACTTCACTCTTGGTTTAAACTTCCGAATGGGAATTGGGATCTTGTAAAGATACTGTCAACTACAGGAACAGAGTCAGTAGTTTCGCTGACTGATGGAAAGGTGTTAAAGGTGAAGGCTGAACATTTGATTTCTGCAAATCCAGATATCCTCGATGGTGTTGATGATCTTATGCAACTTAGCTATTTAAATGAGCCTTCAGTGTTATACGATCTTGAATATAGATACAATCAAGATATTATATATACAAAAGCAGGGCCAGTTCTGGTTGCTATCAATCCATTTAAGAAAGTTGATTTATATGGAAATGATTATATTGAAGCTTACAAGCGCAAAGCAGTTCAAAGCCCGCACGTTTATGCTATTACAGATACAGCCATAAAAGAGATGATTCGAGATGAAGTAAATCAATCAATTATTATAAGTGGTGAGAGTGGAGCTGGAAAAACTGAAACAGCAAAGATAGCTATGCAGTATTTGGCAGCCCTTGGTGGTGGAAGTGGGATAGAACATGAGATATTAAAGACCAATCCTATCTTAGAAGCTTTTGGAAATGCAAAAACATTGAGAAATGATAACTCAAGCCGCTTTGGAAAATTGATAGAAATTCATTTTAGTGAAACCGGGAAAATTGCTGGTGCAAATATTCAAACTTTTTTGCTTGAAAAGTCTAGAGTTGTCCAATGCACAGAGGGAGAAAGGTCATATCACATCTTTTATCAACTTTGTAGTGGGGCTCCACCTGCATTGAAAGAGAGGCTGAACTTGAGAAGAGCGGAAGAGTACAAATATCTCAGCCAGAGCAATTGTTTTTCAATAAGTAGAGTAAATGATGCTGAAGAGTTTGGTATAGTCATGGAAGCACTAGATGTTGTCCATATCAGCAAAGAAGATCAACACAGTGTATTTGCAATGCTTGCTGCTGTGCTGTGGCTGGGAAATGTTTCCTTTAGTGAGATAGACAATGAGAATCATGTGGAGGCCGTGGAAGATGAAGGTTTACAGACTGTTGCTAAACTGATTGAATGCGATATTGAGGAGCTTAAACTAACTTTATCAACTCGAAAAATGAGAGTTGGGAATGACAGCATTGTCCAAAAGCTTACTTTACCTCAGGCAATTGACACTAGAGATGCTTTGGCAAAGTCAATTTATGCTTGTTTGTTTGAGTGGCTGGTCGAACAAATTAACATATCTCTTGCTGTAGGCAAACGACGCACTGGCAGATCCATCAGCATTCTTGATATCTATGGCTTTGAATCATTTGATAGGAATAGTTTTGAACAATTCTGCATTAACTATGCAAATGAGAGACTACAACAACATTTCAATCGTCATTTATTCAAGCTAGAGCAGGAGGAATATATTCAAGATGGTATCGACTGGGCAAAAGTTGATTTTGATGATAACCAAGACTGTCTCAGTCTGTTTGAAAAGAAACCCTTGGGATTATTGTCCCTGTTAGACGAGGAGTCCACTTTTCCAAATGGCACAGATCTGACCTTTGCGAACAAGCTTAAGCAGCATTTGGATCCTAATTCTTCTTTTAGAGGAGAACGAGGGAAAGCCTTTACTGTTTGTCATTATGCAGGAGAGGTCACTTATGATACAACTGGTTTTCTGGAGAAAAACAGGGACTTGCTACATTTAGATTCTATTCAACTCTTATCCTCATGCTCATGCCATCTCCCTCAGATTTTTGCATCCAACATGCTAACTCAATCGGAAAAGTCCATAGGTGGCACTTTACATAAGTCTGGTGGTGCAGAATCCCAAAAACTAAGTGTTGCAAGAAAATTTAAGGGTCAATTATTCCAACTGATGCTCCGTCTTGAAAACACAACACCTCATTTCATCCGTTGCATCAAGCCCAACAACCTTCAGTCGCCAAGATTGTATGAGCAAGAACTTGTATTACAACAGTTAAGATGTTGTGGGGTCCTCGAAGTGGTACGAATATCACGAGCTGGTTTTCCTACCCGGATGTCACATCAGAAATTTGCTAGAAGGTATGGTTTCCTTCTTCAAGATAGCGTTTCATCCCAGGATCCACTAAGTGTCTCGGTCGCAATTCTTCACCAATTCAATATATTGCCAGAAATGTACCAAGTTGGCTATACAAAATTGTTTTTCCGAACGGGGCAGATCGGAATGCTTGAAGATACAAGAAACCGCACTCTCCATGGAATTCTGTGTGTTCAAAGCTGTTATAGAGGGCACCTGGCTCGACGCCACCTCAAAGAGCTGAAGAAAGGAATTTTTGTACTTCAGTCATTTGCACGTGGGGAGAAAGCCAGAAGAGAATATGCAATCTCGATACAAAGGCATAGGGCTGCTATTTCTATTCAAAAGTGTGTGAAAGCCAGAATTGCTAGAAAACGTTTGAAGAAAGTCTGTGATTCATCACTTGTTATACAATCAGTTATCCGTGGATGGTTGGTCAGGAGATGCTCTGGAGACATTGGATTGATGAAACCTGGTGGCCTGACGGCAAATGGGTCAGGCGAGGTGCTGGTCAAGTCATCATTCCTTGCAGAATTACAACGCCGCGTCCTGAAGGCAGAGGCTGCGTTGAGAGAGAAAGAAGAGGAAAACGACATCCTCCATCAGCGCCTCCAACAGTACGAGAACCGTTGGTCCGAGTACGAACTGAAAATGAAGTCAATGGAAGAGGTATGGCAGAGACAAATGAGATCCCTGCAGTCTAGCCTCTCCATTGCAAAGAAAAGCTTAGCAGTTGATGATTCAGAGAGAAATTCGGATGCATCAGTCAATGCAAGTGATGACAGAGGATACAGTTGGGAAGTGGGTAGCAACAACACAGCTACTGAAAGCAATGGAGTGAGACCAATGAATGCAGGTCTTAGCGTCATTAGCCGTATGGCCGAAGAATTCGAACAAAGAAGTCAAGTCTTTGGCGACGATGCGAAGTTCTTGGTAGAGGTAAAATCTGGTCAAGTGGAGGGAAGTCTCGATCCGGATAGGGAACTCAGAAGGTTGAAGCAAATGTTTGAAGCATGGAAGAAAGATTACGGGGTAAGATTGCGCGAAACGAAAGTGATTTTGAATAAGCTTGGGAGTGAAGGTGCCATGGATAGGGTGAAAAAGAAATGGTGGGGAAGGAGGAACAGCACAAGATACAGTTGA | 3534 | 41.54 | MSQKSQVMVSLQSTKSMPVNSRFMIPQAVEASEEPYIRNAKNLEASSLVDGENGASGDDVANRLRYSMNNIDELNEDSPYNCNVITVEQRPSMDDGEDGFMPSPSPSPSLSSSRSDRRWGDTSSYTSRKILHSWFKLPNGNWDLVKILSTTGTESVVSLTDGKVLKVKAEHLISANPDILDGVDDLMQLSYLNEPSVLYDLEYRYNQDIIYTKAGPVLVAINPFKKVDLYGNDYIEAYKRKAVQSPHVYAITDTAIKEMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEHEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKIAGANIQTFLLEKSRVVQCTEGERSYHIFYQLCSGAPPALKERLNLRRAEEYKYLSQSNCFSISRVNDAEEFGIVMEALDVVHISKEDQHSVFAMLAAVLWLGNVSFSEIDNENHVEAVEDEGLQTVAKLIECDIEELKLTLSTRKMRVGNDSIVQKLTLPQAIDTRDALAKSIYACLFEWLVEQINISLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFDDNQDCLSLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLDPNSSFRGERGKAFTVCHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCSCHLPQIFASNMLTQSEKSIGGTLHKSGGAESQKLSVARKFKGQLFQLMLRLENTTPHFIRCIKPNNLQSPRLYEQELVLQQLRCCGVLEVVRISRAGFPTRMSHQKFARRYGFLLQDSVSSQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGMLEDTRNRTLHGILCVQSCYRGHLARRHLKELKKGIFVLQSFARGEKARREYAISIQRHRAAISIQKCVKARIARKRLKKVCDSSLVIQSVIRGWLVRRCSGDIGLMKPGGLTANGSGEVLVKSSFLAELQRRVLKAEAALREKEEENDILHQRLQQYENRWSEYELKMKSMEEVWQRQMRSLQSSLSIAKKSLAVDDSERNSDASVNASDDRGYSWEVGSNNTATESNGVRPMNAGLSVISRMAEEFEQRSQVFGDDAKFLVEVKSGQVEGSLDPDRELRRLKQMFEAWKKDYGVRLRETKVILNKLGSEGAMDRVKKKWWGRRNSTRYS | 1177 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 39520001 | 39532840 | - | Sed0005136.1 | Sed04g2721 | 711324 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g2721 | 1177 | MobiDBLite | consensus disorder prediction | 104 | 118 | - | - | |
| Sed04g2721 | 1177 | Pfam | IQ calmodulin-binding motif | 859 | 876 | IPR000048 | GO:0005515(InterPro) | |
| Sed04g2721 | 1177 | Pfam | IQ calmodulin-binding motif | 931 | 945 | IPR000048 | GO:0005515(InterPro) | |
| Sed04g2721 | 1177 | Pfam | IQ calmodulin-binding motif | 882 | 898 | IPR000048 | GO:0005515(InterPro) | |
| Sed04g2721 | 1177 | MobiDBLite | consensus disorder prediction | 1044 | 1077 | - | - | |
| Sed04g2721 | 1177 | MobiDBLite | consensus disorder prediction | 1061 | 1077 | - | - | |
| Sed04g2721 | 1177 | Gene3D | - | 363 | 419 | - | - | |
| Sed04g2721 | 1177 | FunFam | Myosin heavy chain | 363 | 419 | - | - | |
| Sed04g2721 | 1177 | Gene3D | Kinesin motor domain | 180 | 786 | IPR036961 | - | |
| Sed04g2721 | 1177 | ProSiteProfiles | IQ motif profile. | 878 | 907 | - | - | |
| Sed04g2721 | 1177 | FunFam | Unconventional myosin-XIX | 551 | 743 | - | - | |
| Sed04g2721 | 1177 | PANTHER | MYOSIN | 132 | 1167 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Sed04g2721 | 1177 | CDD | MYSc_Myo8 | 195 | 841 | IPR036022 | - | |
| Sed04g2721 | 1177 | Gene3D | - | 787 | 854 | - | - | |
| Sed04g2721 | 1177 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 154 | 899 | IPR027417 | - | |
| Sed04g2721 | 1177 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 128 | 177 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed04g2721 | 1177 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 420 | 528 | - | - | |
| Sed04g2721 | 1177 | MobiDBLite | consensus disorder prediction | 91 | 118 | - | - | |
| Sed04g2721 | 1177 | Gene3D | - | 906 | 947 | - | - | |
| Sed04g2721 | 1177 | Gene3D | - | 858 | 905 | - | - | |
| Sed04g2721 | 1177 | ProSiteProfiles | IQ motif profile. | 857 | 882 | - | - | |
| Sed04g2721 | 1177 | PRINTS | Myosin heavy chain signature | 539 | 567 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed04g2721 | 1177 | PRINTS | Myosin heavy chain signature | 265 | 290 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed04g2721 | 1177 | PRINTS | Myosin heavy chain signature | 307 | 334 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed04g2721 | 1177 | PRINTS | Myosin heavy chain signature | 211 | 230 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed04g2721 | 1177 | PRINTS | Myosin heavy chain signature | 592 | 620 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed04g2721 | 1177 | Gene3D | - | 551 | 743 | - | - | |
| Sed04g2721 | 1177 | ProSiteProfiles | Myosin motor domain profile. | 181 | 853 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed04g2721 | 1177 | Pfam | Myosin head (motor domain) | 183 | 841 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed04g2721 | 1177 | ProSiteProfiles | IQ motif profile. | 904 | 931 | - | - | |
| Sed04g2721 | 1177 | SMART | iq_5 | 854 | 876 | IPR000048 | GO:0005515(InterPro) | |
| Sed04g2721 | 1177 | SMART | iq_5 | 903 | 925 | IPR000048 | GO:0005515(InterPro) | |
| Sed04g2721 | 1177 | SMART | iq_5 | 926 | 948 | IPR000048 | GO:0005515(InterPro) | |
| Sed04g2721 | 1177 | SMART | iq_5 | 877 | 899 | IPR000048 | GO:0005515(InterPro) | |
| Sed04g2721 | 1177 | Coils | Coil | 973 | 1021 | - | - | |
| Sed04g2721 | 1177 | SMART | MYSc_2a | 175 | 854 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g2721 | Sed-Chr4:39520001 | Sed07g2385 | Sed-Chr7:39651943 | 0.00E+00 | dispersed | |
| Sed04g2721 | Sed-Chr4:39520001 | Sed07g2384 | Sed-Chr7:39651943 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g2721 | - | - | - | 0.0 |