Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2728 ATGGTATCTGAAACTTTGAAGAAGATTGTATCACCCTGCTGGAAACCTTCTGTCGAAGGGGAAGATTCTAGTAGAGTTGGGGATGCTAGTGGTCGGGTTGATGGGCTGTTGTGGTACAAGGATTCTGGCCGTCATATCAATGGAGATTTCTCAATGGCAGTTGTTCAGGCAAATAATTTGTTGGAAGATCGCAGCCAACTTGAGTCTGGGCCACTTAGCGAATTTGAATCGGGTCCCGTTGGAACGTTTGTCGGAATCTATGACGGCCACGGAGGTCCTGAAGCTGCAGAATTCATAAACGGCCGTCTCTTCAATAATATGAAGACTTTTCATGGTGCAGAATATATTCCAGAGAATGGGGGGGTATCAGCTGAAATTATTAACAAAGCATTCTTGGAGACAGAGGAGGAGTTTCTGTCTCTTGTAAAGAAACAATGGCTTATTAAGCCGCAAATTGCTTCAGTTGGTTCATGTTGTTTGGTAGGCGTAATATGTTGTGGATTACTGTATATTGCAAATGCTGGAGATTCTAGAGTGGTGTTGGGAAAATTTGAAAAAACTCATAAAGAGGTTAAAGCTATTCAATTGTCATCTGAGCACAATGCAAGTATCGAATCTGTGAGAAAGGAGTTGCAGTCATTGCATCCCAATGATCCACAGATCGTGGTGTTAAAGCACAAGGTGTGGCGTGTGAAGGGCGTTATTCAGGTCTCAAGAGCCCTCGGTGATGCTTATCTGAAAAAAACCGAGTTCAACCGAGAGCCTCTTTTGCCGAAGTTCAGATTACCAGAACCATTCCACAAGCCAATACTTAAAGCTGAGCCTTCTATCCTAGTGCAGAAACTGGAGCCAGATGATCAGTTTCTTATATTTGCTTCAGATGGTCTTTGGGAGTATATAAGCAATCAGGAAGCTGTCGATATCGTCAATAATTGTCCACGCAATGGGATTGCAAAGAAACTTGTTAAAGCTGCACTTCATGAAGCTGCAAAAAAAAGAGAAATGAGATACGCAGACTTGAAGAAGATAGACCGCGGGGTAAGAAGACATTTTCACGACGACATCACTGTTATAGTTTTGTTCCTGGATTCGCATCTGATTAGTCGAAGTCCGAGTCACGGACCGATGCTATCAATCAGAGGAGGTTCTGGCATCCTTGGATCATAG 1167 43.19 MVSETLKKIVSPCWKPSVEGEDSSRVGDASGRVDGLLWYKDSGRHINGDFSMAVVQANNLLEDRSQLESGPLSEFESGPVGTFVGIYDGHGGPEAAEFINGRLFNNMKTFHGAEYIPENGGVSAEIINKAFLETEEEFLSLVKKQWLIKPQIASVGSCCLVGVICCGLLYIANAGDSRVVLGKFEKTHKEVKAIQLSSEHNASIESVRKELQSLHPNDPQIVVLKHKVWRVKGVIQVSRALGDAYLKKTEFNREPLLPKFRLPEPFHKPILKAEPSILVQKLEPDDQFLIFASDGLWEYISNQEAVDIVNNCPRNGIAKKLVKAALHEAAKKREMRYADLKKIDRGVRRHFHDDITVIVLFLDSHLISRSPSHGPMLSIRGGSGILGS 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39568291 39573242 + Sed0004521.1 Sed04g2728 711331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2728 388 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169(InterPro)
Sed04g2728 388 Gene3D - 39 371 IPR036457 -
Sed04g2728 388 SMART PP2C_4 39 360 IPR001932 -
Sed04g2728 388 CDD PP2Cc 50 362 IPR001932 -
Sed04g2728 388 SUPERFAMILY PP2C-like 44 363 IPR036457 -
Sed04g2728 388 PANTHER PROTEIN PHOSPHATASE 42 361 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed04g2728 388 Pfam Protein phosphatase 2C 82 331 IPR001932 -
Sed04g2728 388 ProSiteProfiles PPM-type phosphatase domain profile. 49 362 IPR001932 -
Sed04g2728 388 FunFam Phosphatase 2C family protein 38 372 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2728 Sed-Chr4:39568291 Sed04g2730 Sed-Chr4:39568291 4.90E-225 dispersed
Sed04g2728 Sed-Chr4:39568291 Sed04g2729 Sed-Chr4:39568291 3.10E-219 tandem
Sed02g0716 Sed-Chr2:45005033 Sed04g2728 Sed-Chr4:39568291 7.20E-141 wgd
Sed04g2728 Sed-Chr4:39568291 Sed07g2417 Sed-Chr7:40031912 2.20E-201 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2728 K01102 - csv:101220760 699.123