Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2729 ATGGTATCTGAAACTTTGAAGAAGATTGTATCACCCTGCTGGAAACCTTCTGTCGAAGGGGAAGATTCTAGTAGAGTTGGGGATGCTAGTGGTCGGGTTGATGGGCTGTTGTGGTACAAGGATTCTGGCCGTCATATCAATGGAGATTTCTCAATGGCAGTTGTTCAGGCAAATAATTTGTTGGAAGATCGCAGCCAACTTGAGTCTGGGCCACTTAGCGAATTTGAATCGGGTCCCGTTGGAACGTTTGTCGGAATCTATGACGGCCACGGAGGTCCTGAAGCTGCAGAATTCATAAACGGCCGTCTCTTCAATAATATGAAGAAATATATTCCAGAGAATGGGGGGGTATCAGCTGAAATTATTAACAAAGCATTCTTGGAGACAGAGGAGGAGTTTCTGTCTCTTGTAAAGAAACAATGGCTTATTAAGCCGCAAATTGCTTCAGTTGGTTCATGTTGTTTGGTAGGCGTAATATGTTGTGGATTACTGTATATTGCAAATGCTGGAGATTCTAGAGTGGTGTTGGGAAAATTTGAAAAAACTCATAAAGAGGTTAAAGCTATTCAATTGTCATCTGAGCACAATGCAAGTATCGAATCTGTGAGAAAGGAGTTGCAGTCATTGCATCCCAATGATCCACAGATCGTGGTGTTAAAGCACAAGGTGTGGCGTGTGAAGGGCGTTATTCAGGTCTCAAGAGCCCTCGGTGATGCTTATCTGAAAAAAACCGAGTTCAACCGAGAGCCTCTTTTGCCGAAGTTCAGATTACCAGAACCATTCCACAAGCCAATACTTAAAGCTGAGCCTTCTATCCTAGTGCAGAAACTGGAGCCAGATGATCAGTTTCTTATATTTGCTTCAGATGGTCTTTGGGAGTATATAAGCAATCAGGAAGCTGTCGATATCGTCAATAATTGTCCACGCAATGGGATTGCAAAGAAACTTGTTAAAGCTGCACTTCATGAAGCTGCAAAAAAAAGAGAAATGAGATACGCAGACTTGAAGAAGATAGACCGCGGGGTAAGAAGACATTTTCACGACGACATCACTGTTATAGTTTTGTTCCTGGATTCGCATCTGATTAGTCGAAGTCCGAGTCACGGACCGATGCTATCAATCAGAGGAGGTTCTGGCATCCTTGGATCATAG 1152 43.14 MVSETLKKIVSPCWKPSVEGEDSSRVGDASGRVDGLLWYKDSGRHINGDFSMAVVQANNLLEDRSQLESGPLSEFESGPVGTFVGIYDGHGGPEAAEFINGRLFNNMKKYIPENGGVSAEIINKAFLETEEEFLSLVKKQWLIKPQIASVGSCCLVGVICCGLLYIANAGDSRVVLGKFEKTHKEVKAIQLSSEHNASIESVRKELQSLHPNDPQIVVLKHKVWRVKGVIQVSRALGDAYLKKTEFNREPLLPKFRLPEPFHKPILKAEPSILVQKLEPDDQFLIFASDGLWEYISNQEAVDIVNNCPRNGIAKKLVKAALHEAAKKREMRYADLKKIDRGVRRHFHDDITVIVLFLDSHLISRSPSHGPMLSIRGGSGILGS 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39568291 39573242 + Sed0004521.2 Sed04g2729 711332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2729 383 SMART PP2C_4 39 355 IPR001932 -
Sed04g2729 383 FunFam Phosphatase 2C family protein 38 367 - -
Sed04g2729 383 Pfam Protein phosphatase 2C 82 326 IPR001932 -
Sed04g2729 383 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169(InterPro)
Sed04g2729 383 ProSiteProfiles PPM-type phosphatase domain profile. 49 357 IPR001932 -
Sed04g2729 383 CDD PP2Cc 50 357 IPR001932 -
Sed04g2729 383 Gene3D - 39 366 IPR036457 -
Sed04g2729 383 PANTHER PROTEIN PHOSPHATASE 42 356 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed04g2729 383 SUPERFAMILY PP2C-like 44 358 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1308 Sed-Chr4:27389475 Sed04g2729 Sed-Chr4:39568291 5.20E-147 dispersed
Sed04g1309 Sed-Chr4:27389475 Sed04g2729 Sed-Chr4:39568291 5.20E-147 dispersed
Sed04g2729 Sed-Chr4:39568291 Sed04g2731 Sed-Chr4:39568291 3.30E-221 dispersed
Sed04g2728 Sed-Chr4:39568291 Sed04g2729 Sed-Chr4:39568291 3.10E-219 tandem
Sed04g2729 Sed-Chr4:39568291 Sed04g2730 Sed-Chr4:39568291 6.80E-219 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2729 K01102 - csv:101220760 682.945