Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g2743 | ATGGGATGGTTTCTTTGTCTTGGAAGTTCAAATAATAAGGAAAAACAGCAGCAACAGCTTCAGAAAGACGAATACGTTCCGATCCCATCCACTTCAGAAAAATTGATGGTAAAGCCATCATTTAATGGGAAGAACGAGGCCCTAAAAGATGGAGGTTCTGATCCTATTTCAGCACAAACAATTACATTCTCATTCCGAGAGTTGGCAGCTGCAACAAAGTATTTTAGAGCAGACTGTCTCTTAGGTGAAGGAGGTTTTGGTCAAGTATATAAAGGACGATTGGAGAGTAGAAATCAGGTAGTTGCCATCAAACAACTTGATCGAAATGGGCTACAAGGAAACAGAGAATTTCTTGTTGAAGTACTGATGTTAAGCCTACTCCATCATCCAAATCTTGTTAATTTAATTGGCTATTGTGCGGATGGCGATCAAAGACTTTTGGTTTATGAATACATGCCATTGGGATCTTTGGAAGACCATCTTCATGATCTCCCACCTGATAAAAGGCGACTCGACTGGAATACAAGAATGAAAATTGCTGCTGGTGCTGCAAAGGGCTTAGAGTATTTACATGACAAAGCTAACCCTCCAGTTATATATCGTGATCTGAAATGCTCTAACATCCTGCTTAGTGAAGATTACCATCCTAAGCTATCCGATTTTGGCTTGGCAAAATTGGGCCCTGTGGGGGATAACACTCATGTGTCCACAAGAGTGATGGGAACTTATGGATACTGTGCTCCTGAATATGCAATGACTGGCCAGCTCACTTTAAAATCAGATGTTTATAGCTTTGGAGTTGTTCTCCTTGAAATTATTACCGGAAGAAAAGCTATCGACAATTCACGAGCCGCAGGGGAACATAATTTGGTGGCATGGGCACATCCCTTATTTAAAGACAGAAGGAAATTTTCACAGATGGCGGATCCATTGCTCCAAGGACAATACCCAGTCAGAGGTTTATACCAAGCTCTTGCAGTAGCTGCAATGTGTGTTCAAGAACAGCCTCATATGCGACCCCTTATTGCCGATGTCGTCACAGCCCTTACATATCTCGCCACCCAAAAATACGATCCCGAAACCCAGCCAGTTCAAAGCGCTCGCAGTAGCTCATCCATGCCTAGATCTTCTAGAAGAGAACTGTGA | 1146 | 42.5 | MGWFLCLGSSNNKEKQQQQLQKDEYVPIPSTSEKLMVKPSFNGKNEALKDGGSDPISAQTITFSFRELAAATKYFRADCLLGEGGFGQVYKGRLESRNQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKRRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLSEDYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEHNLVAWAHPLFKDRRKFSQMADPLLQGQYPVRGLYQALAVAAMCVQEQPHMRPLIADVVTALTYLATQKYDPETQPVQSARSSSSMPRSSRREL | 381 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 39601062 | 39606445 | + | Sed0026908.1 | Sed04g2743 | 711346 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g2743 | 381 | Gene3D | Phosphorylase Kinase; domain 1 | 49 | 151 | - | - | |
Sed04g2743 | 381 | FunFam | Serine/threonine-protein kinase PBS1 | 46 | 151 | - | - | |
Sed04g2743 | 381 | CDD | STKc_IRAK | 81 | 350 | - | - | |
Sed04g2743 | 381 | SUPERFAMILY | Protein kinase-like (PK-like) | 54 | 349 | IPR011009 | - | |
Sed04g2743 | 381 | MobiDBLite | consensus disorder prediction | 359 | 381 | - | - | |
Sed04g2743 | 381 | ProSiteProfiles | Protein kinase domain profile. | 75 | 352 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed04g2743 | 381 | Pfam | Protein tyrosine and serine/threonine kinase | 79 | 346 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed04g2743 | 381 | MobiDBLite | consensus disorder prediction | 359 | 374 | - | - | |
Sed04g2743 | 381 | PANTHER | OS07G0668900 PROTEIN | 16 | 373 | - | - | |
Sed04g2743 | 381 | SMART | serkin_6 | 75 | 352 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed04g2743 | 381 | Gene3D | Transferase(Phosphotransferase) domain 1 | 152 | 372 | - | - | |
Sed04g2743 | 381 | ProSitePatterns | Protein kinases ATP-binding region signature. | 81 | 104 | IPR017441 | GO:0005524(InterPro) | |
Sed04g2743 | 381 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 198 | 210 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed04g2743 | 381 | FunFam | Serine/threonine-protein kinase PBS1 | 152 | 367 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g2743 | Sed-Chr4:39601062 | Sed12g0854 | Sed-Chr12:5311168 | 1.60E-159 | dispersed | |
Sed08g1844 | Sed-Chr8:33113909 | Sed04g2743 | Sed-Chr4:39601062 | 9.80E-84 | dispersed | |
Sed02g0724 | Sed-Chr2:45055854 | Sed04g2743 | Sed-Chr4:39601062 | 9.70E-160 | wgd | |
Sed04g2743 | Sed-Chr4:39601062 | Sed07g2413 | Sed-Chr7:39992296 | 9.80E-202 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79057 | PF07714 | PK_Tyr_Ser-Thr | 3.10E-47 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g2743 | - | - | - | 0.0 |