Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2743 ATGGGATGGTTTCTTTGTCTTGGAAGTTCAAATAATAAGGAAAAACAGCAGCAACAGCTTCAGAAAGACGAATACGTTCCGATCCCATCCACTTCAGAAAAATTGATGGTAAAGCCATCATTTAATGGGAAGAACGAGGCCCTAAAAGATGGAGGTTCTGATCCTATTTCAGCACAAACAATTACATTCTCATTCCGAGAGTTGGCAGCTGCAACAAAGTATTTTAGAGCAGACTGTCTCTTAGGTGAAGGAGGTTTTGGTCAAGTATATAAAGGACGATTGGAGAGTAGAAATCAGGTAGTTGCCATCAAACAACTTGATCGAAATGGGCTACAAGGAAACAGAGAATTTCTTGTTGAAGTACTGATGTTAAGCCTACTCCATCATCCAAATCTTGTTAATTTAATTGGCTATTGTGCGGATGGCGATCAAAGACTTTTGGTTTATGAATACATGCCATTGGGATCTTTGGAAGACCATCTTCATGATCTCCCACCTGATAAAAGGCGACTCGACTGGAATACAAGAATGAAAATTGCTGCTGGTGCTGCAAAGGGCTTAGAGTATTTACATGACAAAGCTAACCCTCCAGTTATATATCGTGATCTGAAATGCTCTAACATCCTGCTTAGTGAAGATTACCATCCTAAGCTATCCGATTTTGGCTTGGCAAAATTGGGCCCTGTGGGGGATAACACTCATGTGTCCACAAGAGTGATGGGAACTTATGGATACTGTGCTCCTGAATATGCAATGACTGGCCAGCTCACTTTAAAATCAGATGTTTATAGCTTTGGAGTTGTTCTCCTTGAAATTATTACCGGAAGAAAAGCTATCGACAATTCACGAGCCGCAGGGGAACATAATTTGGTGGCATGGGCACATCCCTTATTTAAAGACAGAAGGAAATTTTCACAGATGGCGGATCCATTGCTCCAAGGACAATACCCAGTCAGAGGTTTATACCAAGCTCTTGCAGTAGCTGCAATGTGTGTTCAAGAACAGCCTCATATGCGACCCCTTATTGCCGATGTCGTCACAGCCCTTACATATCTCGCCACCCAAAAATACGATCCCGAAACCCAGCCAGTTCAAAGCGCTCGCAGTAGCTCATCCATGCCTAGATCTTCTAGAAGAGAACTGTGA 1146 42.5 MGWFLCLGSSNNKEKQQQQLQKDEYVPIPSTSEKLMVKPSFNGKNEALKDGGSDPISAQTITFSFRELAAATKYFRADCLLGEGGFGQVYKGRLESRNQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKRRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLSEDYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEHNLVAWAHPLFKDRRKFSQMADPLLQGQYPVRGLYQALAVAAMCVQEQPHMRPLIADVVTALTYLATQKYDPETQPVQSARSSSSMPRSSRREL 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39601062 39606445 + Sed0026908.1 Sed04g2743 711346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2743 381 Gene3D Phosphorylase Kinase; domain 1 49 151 - -
Sed04g2743 381 FunFam Serine/threonine-protein kinase PBS1 46 151 - -
Sed04g2743 381 CDD STKc_IRAK 81 350 - -
Sed04g2743 381 SUPERFAMILY Protein kinase-like (PK-like) 54 349 IPR011009 -
Sed04g2743 381 MobiDBLite consensus disorder prediction 359 381 - -
Sed04g2743 381 ProSiteProfiles Protein kinase domain profile. 75 352 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2743 381 Pfam Protein tyrosine and serine/threonine kinase 79 346 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g2743 381 MobiDBLite consensus disorder prediction 359 374 - -
Sed04g2743 381 PANTHER OS07G0668900 PROTEIN 16 373 - -
Sed04g2743 381 SMART serkin_6 75 352 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2743 381 Gene3D Transferase(Phosphotransferase) domain 1 152 372 - -
Sed04g2743 381 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524(InterPro)
Sed04g2743 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g2743 381 FunFam Serine/threonine-protein kinase PBS1 152 367 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2743 Sed-Chr4:39601062 Sed12g0854 Sed-Chr12:5311168 1.60E-159 dispersed
Sed08g1844 Sed-Chr8:33113909 Sed04g2743 Sed-Chr4:39601062 9.80E-84 dispersed
Sed02g0724 Sed-Chr2:45055854 Sed04g2743 Sed-Chr4:39601062 9.70E-160 wgd
Sed04g2743 Sed-Chr4:39601062 Sed07g2413 Sed-Chr7:39992296 9.80E-202 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79057 PF07714 PK_Tyr_Ser-Thr 3.10E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2743 - - - 0.0