Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2747 ATGTTGGATCTAAACGATTCGGTTATGAACTGCGACGAAACGACGACGAATCGGATTGTAATGGAAGATTCCGACACGTCGAATTCCTCCGTCTGCAACAGCAGAGACGAAGATTCCTCGGTTTTAATCTTCGATATTCTCAAAAGGGAAAATTCTGCCGCCGTTGAGTCGCCGGAAATGGTGACTCCGGTGGGTTTTCCGGTGGACGGAGGGTGGGGGAAAACTGGGTCTCCGGTGCGGAGGACCCATTGGTTGAACCTTTCTTCGGCGGTGGAATCCGGTGGTGGAGGAGCGGCGGAGGTGAGAGTTGTGCAGCAGAAACCGGCGAGGAAGAGCCGCCGTGGGCCGCGGTCCCGGAGCTCGCAGTACCGGGGAGTTACTTTTTACCGGCGGACTGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAAGTGTATTTGGGTGGGTTCGACACGGCCCATGCTGCAGCAAGGGCATACGATCAAGCAGCAATAAGGTTTAGAGGAGTCAATGCAGACATAAACTTCGACACAAGTGACTACGACGAAGAAATGAAACAAATGAAGAATCTAAACAAAGAAGAATTTGTGCAAGTTCTTCGTCGACAAAGCACGGGATTTTCACGTGGAGGATCGAAGCTAAGAGGATTATCTCTTAAAAAATATGGAAGATGGGAAGCTCAAATGAGCCAAATAATGGGAAAGAATGGAATTGAGCAGAGGTCTTATAAAGGGGAGACAATGGTGGATGCAAGCAATGGAGGTAATGAGCATAACCTTGATCTAAGCATTGGAGGAATTTTCAACTACCAATTAAGTAACTCTTCCCAAAAGCCTAACATTGAAAGACCAAAGATCAATGAAAACAATGGTTGTGCATATGGTGTGGTTGGACAACAACCTCAAATTATTCCTCCTTCTATGTGGTCTGGTTTTTTCTCTGGTTTTGTAGCAGATAATGATAGAAGGGAGAAAGAGAAAAGAAACTACGACTCGTTCCTTACGAGCTAG 1014 46.65 MLDLNDSVMNCDETTTNRIVMEDSDTSNSSVCNSRDEDSSVLIFDILKRENSAAVESPEMVTPVGFPVDGGWGKTGSPVRRTHWLNLSSAVESGGGGAAEVRVVQQKPARKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDQAAIRFRGVNADINFDTSDYDEEMKQMKNLNKEEFVQVLRRQSTGFSRGGSKLRGLSLKKYGRWEAQMSQIMGKNGIEQRSYKGETMVDASNGGNEHNLDLSIGGIFNYQLSNSSQKPNIERPKINENNGCAYGVVGQQPQIIPPSMWSGFFSGFVADNDRREKEKRNYDSFLTS 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39658370 39662238 + Sed0024418.1 Sed04g2747 711350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2747 337 SMART rav1_2 122 184 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g2747 337 ProSiteProfiles AP2/ERF domain profile. 122 178 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g2747 337 Pfam AP2 domain 122 170 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g2747 337 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 28 244 - -
Sed04g2747 337 Gene3D AP2/ERF domain 121 180 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g2747 337 FunFam AP2-like ethylene-responsive transcription factor 121 180 - -
Sed04g2747 337 SUPERFAMILY DNA-binding domain 121 179 IPR016177 GO:0003677(InterPro)
Sed04g2747 337 MobiDBLite consensus disorder prediction 92 123 - -
Sed04g2747 337 CDD AP2 122 180 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2747 Sed-Chr4:39658370 Sed05g2900 Sed-Chr5:39971405 1.10E-63 dispersed
Sed04g2747 Sed-Chr4:39658370 Sed04g2748 Sed-Chr4:39658370 2.00E-161 tandem
Sed02g0736 Sed-Chr2:45089942 Sed04g2747 Sed-Chr4:39658370 4.70E-60 wgd
Sed04g2747 Sed-Chr4:39658370 Sed07g2411 Sed-Chr7:39948050 2.30E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38282 PF00847 AP2 3.10E-10 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2747 K09284 - csv:101204131 469.929