Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2748 ATGTTGGATCTAAACGATTCGGTTATGAACTGCGACGAAACGACGACGAATCGGATTGTAATGGAAGATTCCGACACGTCGAATTCCTCCGTCTGCAACAGCAGAGACGAAGATTCCTCGGTTTTAATCTTCGATATTCTCAAAAGGGAAAATTCTGCCGCCGTTGAGTCGCCGGAAATGGTGACTCCGGTGGGTTTTCCGGTGGACGGAGGGTGGGGGAAAACTGGGTCTCCGGTGCGGAGGACCCATTGGTTGAACCTTTCTTCGGCGGTGGAATCCGGTGGTGGAGGAGCGGCGGAGGTGAGAGTTGTGCAGCAGAAACCGGCGAGGAAGAGCCGCCGTGGGCCGCGGTCCCGGAGCTCGCAGTACCGGGGAGTTACTTTTTACCGGCGGACTGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAAGTGTATTTGGGTGGGTTCGACACGGCCCATGCTGCAGCAAGGGCATACGATCAAGCAGCAATAAGGTTTAGAGGAGTCAATGCAGACATAAACTTCGACACAAGTGACTACGACGAAGAAATGAAACAAATGAAGAATCTAAACAAAGAAGAATTTGTGCAAGTTCTTCGTCGACAAAGCACGGGATTTTCACGTGGAGGATCGAAGCTAAGAGGATTATCTCTTAAAAAATATGGAAGATGGGAAGCTCAAATGAGCCAAATAATGGGAAAGAATGGAATTGAGCAGAGGTCTTATAAAGGGGAGACAATGGTGGATGCAAGCAATGGAGGTAATGAGCATAACCTTGATCTAAGCATTGGAGGAATTTTCAACTACCAATTAAGTAACTCTTCCCAAAAGCCTAACATTGAAAGACCAAAGGTAGAAAAAAAAATTAATTGGAGAAGAGAAGAGTATAATAGAATTAATTTATATATTTTTCTTATATTTTGTTTGTGGGCAGATCAATGA 948 45.57 MLDLNDSVMNCDETTTNRIVMEDSDTSNSSVCNSRDEDSSVLIFDILKRENSAAVESPEMVTPVGFPVDGGWGKTGSPVRRTHWLNLSSAVESGGGGAAEVRVVQQKPARKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDQAAIRFRGVNADINFDTSDYDEEMKQMKNLNKEEFVQVLRRQSTGFSRGGSKLRGLSLKKYGRWEAQMSQIMGKNGIEQRSYKGETMVDASNGGNEHNLDLSIGGIFNYQLSNSSQKPNIERPKVEKKINWRREEYNRINLYIFLIFCLWADQ 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39658370 39661481 + Sed0024418.2 Sed04g2748 711351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2748 315 SMART rav1_2 122 184 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g2748 315 ProSiteProfiles AP2/ERF domain profile. 122 178 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g2748 315 Gene3D AP2/ERF domain 121 180 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g2748 315 SUPERFAMILY DNA-binding domain 121 179 IPR016177 GO:0003677(InterPro)
Sed04g2748 315 FunFam AP2-like ethylene-responsive transcription factor 121 180 - -
Sed04g2748 315 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 28 244 - -
Sed04g2748 315 MobiDBLite consensus disorder prediction 92 123 - -
Sed04g2748 315 CDD AP2 122 180 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g2748 315 Pfam AP2 domain 122 170 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2748 Sed-Chr4:39658370 Sed07g2411 Sed-Chr7:39948050 2.30E-124 dispersed
Sed04g2747 Sed-Chr4:39658370 Sed04g2748 Sed-Chr4:39658370 2.00E-161 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38283 PF00847 AP2 2.80E-10 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2748 K09284 - csv:101204131 424.091