Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2752 ATGGCGGACCCTCCGATGAGTCCCGCCGCCGTCAGCCACGAGAGCGGCGGCGAGCAGAGCCCCAACACCGGCGGCGGCGGCGTTCGCGAGCAGGACCGTTACCTCCCCATCGCCAACATCAGTCGGATCATGAAGAAGGTCCTGCCTGCTAATGGCAAGATCGCTAAGGACGCTAAGGATACCGTCCAGGAATGCGTCTCCGAATTCATCAGCTTCGTTACTAGCGAGGCGAGTGATAAGTGCCAGAAGGAGAAGAGAAAGACGATTAATGGCGATGATTTGCTTTGGGCGATGGCCACGTTGGGTTTTGAGGAATATATTGATCCGCTTAAGTTGTACCTTACTAGGTACAGAGAGTTGGAGTGTGATGCTAAAGGATCTTCGAGGGGTGGTGATGAATCTACTAAAAGGGATGCAGTGGGAACATTGCCTGGTCAAAATTCTCAGCAGTACATGCAGCCGGGAGCATTGACCTACATGTCACAATTCGAAGAACCAGGGTATCCTAAAGAGTATGAGTACAAGTCTTCAACATGGCGGCAATAA 546 52.2 MADPPMSPAAVSHESGGEQSPNTGGGGVREQDRYLPIANISRIMKKVLPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKLYLTRYRELECDAKGSSRGGDESTKRDAVGTLPGQNSQQYMQPGALTYMSQFEEPGYPKEYEYKSSTWRQ 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39682936 39688337 + Sed0016704.1 Sed04g2752 711355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2752 181 PRINTS CCAAT-binding transcription factor subunit A signature 100 118 - -
Sed04g2752 181 PRINTS CCAAT-binding transcription factor subunit A signature 62 80 - -
Sed04g2752 181 PRINTS CCAAT-binding transcription factor subunit A signature 81 99 - -
Sed04g2752 181 MobiDBLite consensus disorder prediction 1 31 - -
Sed04g2752 181 MobiDBLite consensus disorder prediction 140 156 - -
Sed04g2752 181 MobiDBLite consensus disorder prediction 124 156 - -
Sed04g2752 181 FunFam Nuclear transcription factor Y subunit B-3 24 152 - -
Sed04g2752 181 SUPERFAMILY Histone-fold 31 133 IPR009072 GO:0046982(InterPro)
Sed04g2752 181 ProSitePatterns NF-YB/HAP3 subunit signature. 65 81 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g2752 181 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 34 98 IPR003958 -
Sed04g2752 181 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 25 151 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Sed04g2752 181 Gene3D Histone, subunit A 25 155 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1329 Sed-Chr4:27612408 Sed04g2752 Sed-Chr4:39682936 2.90E-54 dispersed
Sed04g2752 Sed-Chr4:39682936 Sed04g2754 Sed-Chr4:39682936 1.90E-102 dispersed
Sed04g2752 Sed-Chr4:39682936 Sed04g2753 Sed-Chr4:39682936 2.80E-90 tandem
Sed02g0739 Sed-Chr2:45156867 Sed04g2752 Sed-Chr4:39682936 3.30E-56 wgd
Sed04g2752 Sed-Chr4:39682936 Sed07g2408 Sed-Chr7:39930068 4.40E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38284 PF00808 CBFD_NFYB_HMF 1.50E-27 CL0012 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2752 K08065 - csv:101223123 290.812