Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g2753 | ATGGCGGACCCTCCGATGAGTCCCGCCGCCGTCAGCCACGAGAGCGGCGGCGAGCAGAGCCCCAACACCGGCGGCGGCGGCGTTCGCGAGCAGGACCGTTACCTCCCCATCGCCAACATCAGTCGGATCATGAAGAAGGTCCTGCCTGCTAATGGCAAGATCGCTAAGGACGCTAAGGATACCGTCCAGGAATGCGTCTCCGAATTCATCAGCTTCGTTACTAGCGAGGCGAGTGATAAGTGCCAGAAGGAGAAGAGAAAGACGATTAATGGCGATGATTTGCTTTGGGCGATGGCCACGTTGGGTTTTGAGGAATATATTGATCCGCTTAAGTTGTACCTTACTAGGTACAGAGAGTTGGAGTGTGATGCTAAAGGATCTTCGAGGGGTGGTGATGAATCTACTAAAAGGGATGCAGTGGGAACATTGCCTGGTCAAAATTCTCAGCAGTACATGCAGCCGGGAGCATTGACCTACATGTCACAAGTAATAATCTCTCTTCTCTCAACTTGTCAACATGCTATTCAGAAATACCCTCCTTTTTATTGCTTATTATTGGATTAA | 564 | 50.35 | MADPPMSPAAVSHESGGEQSPNTGGGGVREQDRYLPIANISRIMKKVLPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKLYLTRYRELECDAKGSSRGGDESTKRDAVGTLPGQNSQQYMQPGALTYMSQVIISLLSTCQHAIQKYPPFYCLLLD | 187 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 39682936 | 39688337 | + | Sed0016704.2 | Sed04g2753 | 711356 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g2753 | 187 | SUPERFAMILY | Histone-fold | 31 | 133 | IPR009072 | GO:0046982(InterPro) | |
Sed04g2753 | 187 | Gene3D | Histone, subunit A | 25 | 154 | IPR009072 | GO:0046982(InterPro) | |
Sed04g2753 | 187 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 34 | 98 | IPR003958 | - | |
Sed04g2753 | 187 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 65 | 81 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed04g2753 | 187 | PRINTS | CCAAT-binding transcription factor subunit A signature | 81 | 99 | - | - | |
Sed04g2753 | 187 | PRINTS | CCAAT-binding transcription factor subunit A signature | 62 | 80 | - | - | |
Sed04g2753 | 187 | PRINTS | CCAAT-binding transcription factor subunit A signature | 100 | 118 | - | - | |
Sed04g2753 | 187 | MobiDBLite | consensus disorder prediction | 124 | 147 | - | - | |
Sed04g2753 | 187 | FunFam | Nuclear transcription factor Y subunit B-3 | 24 | 148 | - | - | |
Sed04g2753 | 187 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Sed04g2753 | 187 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 25 | 147 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g1330 | Sed-Chr4:27612408 | Sed04g2753 | Sed-Chr4:39682936 | 1.20E-54 | dispersed | |
Sed04g2753 | Sed-Chr4:39682936 | Sed04g2755 | Sed-Chr4:39682936 | 1.90E-105 | dispersed | |
Sed04g2752 | Sed-Chr4:39682936 | Sed04g2753 | Sed-Chr4:39682936 | 2.80E-90 | tandem | |
Sed04g2753 | Sed-Chr4:39682936 | Sed04g2754 | Sed-Chr4:39682936 | 1.70E-90 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38285 | PF00808 | CBFD_NFYB_HMF | 1.60E-27 | CL0012 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g2753 | K08065 | - | csv:101223123 | 290.812 |