Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2762 ATGGCTTACGTGGTCCAATGTACGAACTCTCCACCGACGACGATCACTTTGCCTAACCCCCAATCTTACTCCGGCGGCGGCGCCACCAAATTGGGTTCGCCGGCCAGTTCTCAGCCGTCATCGCCGCCGGCCACGGTGGTGCTCAGCCCCTGCGCCGCCTGCAAGATCCTCCGGCGTCGGTGCGTGGAGAAGTGCGTTTTGGCTCCTTATTTTCCTCCGACGGAGCCTCTCAAGTTTACCATTGCTCATAGAGTCTTTGGAGCTAGCAATATCATTAAGTTCTTGCAAGAGCTTCCAGAGTCTCAAAGAACAGATGCAGTGAGTAGTATGGTGTATGAGGCAAATGCACGTCTACGAGATCCAATATATGGTAGCACAGGTACAATTTGTCAACTGCAAAAACAAGTGAGTGAGCTGCAAGCTCAACTAGCCAAAGCGAGGGCAGAAGTGGCCAATATGCAACAACAACAAGCCAACTTAATGGCCTTGATTTTCATGGAAATGGGACAGTCTCCCGAGCCCGTTTGGCCACCGCAGCTCGTTGACACCACCTCAACCTGTTTCTTCGACGACTCAACCCTTAGCTCACCATGGCCGCTTTGGACATGA 609 52.55 MAYVVQCTNSPPTTITLPNPQSYSGGGATKLGSPASSQPSSPPATVVLSPCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRTDAVSSMVYEANARLRDPIYGSTGTICQLQKQVSELQAQLAKARAEVANMQQQQANLMALIFMEMGQSPEPVWPPQLVDTTSTCFFDDSTLSSPWPLWT 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39725827 39728022 + Sed0013040.1 Sed04g2762 711365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2762 202 Coils Coil 129 163 - -
Sed04g2762 202 ProSiteProfiles LOB domain profile. 49 150 IPR004883 -
Sed04g2762 202 Pfam Lateral organ boundaries (LOB) domain 50 147 IPR004883 -
Sed04g2762 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 49 159 - -
Sed04g2762 202 MobiDBLite consensus disorder prediction 15 43 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2762 Sed-Chr4:39725827 Sed05g2881 Sed-Chr5:39841616 8.40E-43 dispersed
Sed04g2762 Sed-Chr4:39725827 Sed07g2403 Sed-Chr7:39877444 1.90E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38288 PF03195 LOB 1.80E-40 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2762 - - - 0.0