Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2781 ATGGCAGCTGCCTCACTCCTTCTTCTAACCTCTTCACTCTCTCTTCCAATTCCTTTTTTTTCTTCTTCCATGTCTACTTCTGAACCTTCCAATGCCGTCTCCAACAAGAAGCCCCCCTCCAAGGACCGCCACACCAAGGTCGACGGCCGCGGCCGCCGCATCCGCATGCCCATCATCTGCGCCGCCCGCGTCTTCCAGCTCACCCGCGAACTCGGCCACAAATCCGACGGCCAGACCATCGAGTGGCTCCTCCGCCAAGCCGAGCCCTCCATCATCGCCGCCACCGGCACCGGCACCACCCCCGCCAATTTCTCCTCCCTCTCCCTTTCCGTCCGGGGTAACGCCGCCTCCGTCTCTCTCTCCTCCTCCGCTACTTCCACCCTCTCCCTCTCTCGCTCCTCCCCAACCCCCCCCTTTCTTCTCGGCAAGCGCGTCCGCCCCGACGCCAAGGACGACGGCCTGGCGGTTGGGTCCATCGTGGGTCCGACCGGGCCGAGTGCCTACTGGGCCATTCCGGCCAGGCCGGATTACGGGCAGGTGTGGAGCTTTGCGCCTTCGTCGGAGATGGCTCAGCAGGCCTCCTTGTTTTCCCAACAGCAGCACCACCACCCGATCAGAGAAGCCTCGGCGGCGAGAGTCGGGAATTACCTTCCCGGTCATCTGAATTTACTCGCGTCTTTGTCCGGCGGCGGCGGAGGTTCCGGCCTCCGGGAAGATGGCCCTCGCTGA 729 63.79 MAAASLLLLTSSLSLPIPFFSSSMSTSEPSNAVSNKKPPSKDRHTKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSLSLSVRGNAASVSLSSSATSTLSLSRSSPTPPFLLGKRVRPDAKDDGLAVGSIVGPTGPSAYWAIPARPDYGQVWSFAPSSEMAQQASLFSQQQHHHPIREASAARVGNYLPGHLNLLASLSGGGGGSGLREDGPR 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39860997 39862366 + Sed0007315.1 Sed04g2781 711384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2781 242 Pfam TCP family transcription factor 40 127 IPR017887 -
Sed04g2781 242 MobiDBLite consensus disorder prediction 22 48 - -
Sed04g2781 242 MobiDBLite consensus disorder prediction 22 36 - -
Sed04g2781 242 ProSiteProfiles TCP domain profile. 40 94 IPR017887 -
Sed04g2781 242 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 29 194 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0942 Sed-Chr3:5846602 Sed04g2781 Sed-Chr4:39860997 1.70E-51 dispersed
Sed04g2781 Sed-Chr4:39860997 Sed06g1538 Sed-Chr6:40133483 3.10E-31 dispersed
Sed04g2781 Sed-Chr4:39860997 Sed07g2387 Sed-Chr7:39681351 6.70E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38289 PF03634 TCP 1.20E-33 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2781 K16221 - csv:101206050 266.544