Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g2781 | ATGGCAGCTGCCTCACTCCTTCTTCTAACCTCTTCACTCTCTCTTCCAATTCCTTTTTTTTCTTCTTCCATGTCTACTTCTGAACCTTCCAATGCCGTCTCCAACAAGAAGCCCCCCTCCAAGGACCGCCACACCAAGGTCGACGGCCGCGGCCGCCGCATCCGCATGCCCATCATCTGCGCCGCCCGCGTCTTCCAGCTCACCCGCGAACTCGGCCACAAATCCGACGGCCAGACCATCGAGTGGCTCCTCCGCCAAGCCGAGCCCTCCATCATCGCCGCCACCGGCACCGGCACCACCCCCGCCAATTTCTCCTCCCTCTCCCTTTCCGTCCGGGGTAACGCCGCCTCCGTCTCTCTCTCCTCCTCCGCTACTTCCACCCTCTCCCTCTCTCGCTCCTCCCCAACCCCCCCCTTTCTTCTCGGCAAGCGCGTCCGCCCCGACGCCAAGGACGACGGCCTGGCGGTTGGGTCCATCGTGGGTCCGACCGGGCCGAGTGCCTACTGGGCCATTCCGGCCAGGCCGGATTACGGGCAGGTGTGGAGCTTTGCGCCTTCGTCGGAGATGGCTCAGCAGGCCTCCTTGTTTTCCCAACAGCAGCACCACCACCCGATCAGAGAAGCCTCGGCGGCGAGAGTCGGGAATTACCTTCCCGGTCATCTGAATTTACTCGCGTCTTTGTCCGGCGGCGGCGGAGGTTCCGGCCTCCGGGAAGATGGCCCTCGCTGA | 729 | 63.79 | MAAASLLLLTSSLSLPIPFFSSSMSTSEPSNAVSNKKPPSKDRHTKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSLSLSVRGNAASVSLSSSATSTLSLSRSSPTPPFLLGKRVRPDAKDDGLAVGSIVGPTGPSAYWAIPARPDYGQVWSFAPSSEMAQQASLFSQQQHHHPIREASAARVGNYLPGHLNLLASLSGGGGGSGLREDGPR | 242 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 39860997 | 39862366 | + | Sed0007315.1 | Sed04g2781 | 711384 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g2781 | 242 | Pfam | TCP family transcription factor | 40 | 127 | IPR017887 | - | |
Sed04g2781 | 242 | MobiDBLite | consensus disorder prediction | 22 | 48 | - | - | |
Sed04g2781 | 242 | MobiDBLite | consensus disorder prediction | 22 | 36 | - | - | |
Sed04g2781 | 242 | ProSiteProfiles | TCP domain profile. | 40 | 94 | IPR017887 | - | |
Sed04g2781 | 242 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 29 | 194 | IPR005333 | GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0942 | Sed-Chr3:5846602 | Sed04g2781 | Sed-Chr4:39860997 | 1.70E-51 | dispersed | |
Sed04g2781 | Sed-Chr4:39860997 | Sed06g1538 | Sed-Chr6:40133483 | 3.10E-31 | dispersed | |
Sed04g2781 | Sed-Chr4:39860997 | Sed07g2387 | Sed-Chr7:39681351 | 6.70E-63 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38289 | PF03634 | TCP | 1.20E-33 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g2781 | K16221 | - | csv:101206050 | 266.544 |