Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2783 ATGGGAGATTTGTATCTTCATTTTCTTATCTGGGTTTTGTGTGTTCTGTGTTTATCTTCATCTCTCTCGTTAGGATTCTCTCCTGATGATAATTTTCTGATTGATTCTGGATCATCCTCTAATATAACAGTTGGAGGTCGTGTATTTCATCCTGAAGATTTTTTCTCTGGTAATCTTTCATACCCAAATGGGGAATTTGTTTCCACTACAAGCAATGTATCTATTTCACCTCAATTACTTTTGTTTTCACCTCTCTTTCAAACTGCAAAAGTAATTGAAGCGATTTCCAAATACAGCTTCAAGATTAAGAAACAGGGCAGACACTGGATCCGCCTCTACTTTTACCCTTTTGTTTCTGGAAACTTCAACTTGAGTTTAGCCAGATTCTCAGTTTCTGCTCAAGATATTATCCTTCTCAATGAGTTTCAGATCGACAGTGGATCGGTTATGAAGGAGTATTCTCTGAATGTCACTTCCAGTAACCTTGTTCTTACATTCACTCCCATGGGGAATTCATTTGCCTTCATAAATGCATTGGAAGTTGTTTCTGTCCCTAATGAACTGATTCCTTTGCATGTCTCCACTGTGGAGAATGTAGAAAAAAGTTTGGAGAACAAGGCATTGGAGATAGTTGCTAGAGTGAATATGGGTAATGAAACCGTGCTTCCGAATGGCGATACTCTCTCGCGCCTTTGGGTTGCTGATGGTCCATACTTGATTCATAACAATCACGGTTTTGTTGGGAAGTTTGTGTCAAATCTCACGAGAGTGAACATGACAACAGACTCAGAAATTAAGGCTCCTCGCTCTGTGTATGGAACAGCAACTCAGTTACAAGGTGGTCCAGATTCGGCTACGATTGCTAATGTATCGTGGACATTTGATGTGGATCCGGGCTATGAATATATGATTCGCTTCCATTTCTGTGATATTGTAAGTCCTCCTCTTGAATCGACGCTCTTAAGTGTTTATGTTGACTCGTGGAAAGTTCAAGATCATCTTAATCTTTATGAACTCACTTTAGGCATCCTAGGTGCACCCTATGTCTTGGACACCATAGCTAGTACGATTGACAGCTCTAAGTTCAAAATTAGTGTTGGGTCTTCCAGTTTGGTTGATATGTCGAGTGCCATGCTTAATGGACTGGAGATCATGAAAATAAGCGATTCTCGGCGGAGCCTTGATGAACCCCCTTTTGATTCACACTCAAAGAAAGGTTCCAATGTGAAGATCGGTCTTATAGCAGGCTTGGTTGTTGGACTGGTTGTTGCTGCTGTTTTGGTAACTCTTGTCTTCATGCTATGCAGAAGAAGGAGATCGGCGCTCGACGATCACTTGAAGAAGGAAGAGGAAAGTTTTGGCGTGAGTGGACGAGAAAGCAGCTCTGTCATTGGATCTATTGCCTTTTCGAGCTCCAAGATTGGTTATCGATATCCTCTGGCAGCTATTTTGGAAGCTACTGATCATTTTAGTGAAAGCTTAGCCATTGGCTTTGGTGGGTTTGGGAAAGTTTACAAGGGAATGTTGAGGGACAGTACAGAAGTGGCAGTAAAAAGAGGGGCTTCAAAATCTCAGCAGGGTCTTGCAGAGTTTCGAACTGAAATCGAGATGTTGTCCCAATTTCGCCACCGTCATTTGGTATCTCTGATTGGTTACTGCGATGAGAAAAACGAGATGATTATAATTTATGAGTACATGGAAAAAGGGACTCTCAAGGACCATTTGTATGGATCAGAACTTCCAAGATTAAGCTGGAAACAAAGGCTTGAGATTTGCATTGGCTCGGCTAGAGGACTTCACTATCTTCACACTGGCTCCACAAAGGCAATCATACACAGAGATGTCAAAACTGCAAACATTCTTCTAGATCAAAACTACATGGCCAAAGTTGCAGACTTCGGTCTCTCGAAAACTGGCCCTGAATTCGATAAGACTCATGTCAGTACAGCAGTCAGAGGAAGCTTCGGCTATCTCGATCCTGAGTATTTAACAACACAACAACTGACTGAGAAATCCGATGTCTACTCTTTCGGCGTGGTAATGTTTGAAGTCCTTTGCGGTAGGCCTGTCATTGATCCGTCTCTCCCAAGGGAAAAAGTGAATTTGATTGAATGGATAATGAGAAGGAAGGATAGAGATCAACTAGAGGCTATCGTAGATGCTTGTATTGTCGAGCAAATCAAGCTAGATTCCCTGAGGAAATACATAGAGACAGCCGAGAAATGCTTATCAGAATGTGGCATGGATCGCCCGACTATGGGAAACGTTTTGTGGAATCTGGAGTGTGCACTTCAACTCCAAGAGGATGAAAAATCCTGTCATAGCAAGGAATCATCCTCACAACCTGACCATTTCAACCAGTGGGAGGCGAGCGTATCTGCTTCTCAATTCAGCACGGGGAGTGCGGTTGACATCGCGGGTATTTCGATGAGTAAGGTATTTGCTCAAATGGTGAGGGAAGATATGAGATAG 2472 42.35 MGDLYLHFLIWVLCVLCLSSSLSLGFSPDDNFLIDSGSSSNITVGGRVFHPEDFFSGNLSYPNGEFVSTTSNVSISPQLLLFSPLFQTAKVIEAISKYSFKIKKQGRHWIRLYFYPFVSGNFNLSLARFSVSAQDIILLNEFQIDSGSVMKEYSLNVTSSNLVLTFTPMGNSFAFINALEVVSVPNELIPLHVSTVENVEKSLENKALEIVARVNMGNETVLPNGDTLSRLWVADGPYLIHNNHGFVGKFVSNLTRVNMTTDSEIKAPRSVYGTATQLQGGPDSATIANVSWTFDVDPGYEYMIRFHFCDIVSPPLESTLLSVYVDSWKVQDHLNLYELTLGILGAPYVLDTIASTIDSSKFKISVGSSSLVDMSSAMLNGLEIMKISDSRRSLDEPPFDSHSKKGSNVKIGLIAGLVVGLVVAAVLVTLVFMLCRRRRSALDDHLKKEEESFGVSGRESSSVIGSIAFSSSKIGYRYPLAAILEATDHFSESLAIGFGGFGKVYKGMLRDSTEVAVKRGASKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDEKNEMIIIYEYMEKGTLKDHLYGSELPRLSWKQRLEICIGSARGLHYLHTGSTKAIIHRDVKTANILLDQNYMAKVADFGLSKTGPEFDKTHVSTAVRGSFGYLDPEYLTTQQLTEKSDVYSFGVVMFEVLCGRPVIDPSLPREKVNLIEWIMRRKDRDQLEAIVDACIVEQIKLDSLRKYIETAEKCLSECGMDRPTMGNVLWNLECALQLQEDEKSCHSKESSSQPDHFNQWEASVSASQFSTGSAVDIAGISMSKVFAQMVREDMR 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39872829 39876169 - Sed0024870.1 Sed04g2783 711386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2783 823 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g2783 823 SUPERFAMILY Protein kinase-like (PK-like) 473 761 IPR011009 -
Sed04g2783 823 Gene3D Phosphorylase Kinase; domain 1 456 565 - -
Sed04g2783 823 ProSiteProfiles Protein kinase domain profile. 490 764 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2783 823 Pfam Malectin-like domain 98 387 IPR024788 -
Sed04g2783 823 FunFam Receptor-like protein kinase FERONIA 566 782 - -
Sed04g2783 823 ProSitePatterns Protein kinases ATP-binding region signature. 496 518 IPR017441 GO:0005524(InterPro)
Sed04g2783 823 Gene3D Transferase(Phosphotransferase) domain 1 566 787 - -
Sed04g2783 823 PANTHER OS01G0750732 PROTEIN 396 797 IPR050885 -
Sed04g2783 823 SMART serkin_6 490 736 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2783 823 CDD STKc_IRAK 496 761 - -
Sed04g2783 823 FunFam Putative receptor-like protein kinase 31 185 - -
Sed04g2783 823 Gene3D - 206 388 - -
Sed04g2783 823 Gene3D - 31 185 - -
Sed04g2783 823 Pfam Protein tyrosine and serine/threonine kinase 495 691 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g2783 823 FunFam receptor-like protein kinase FERONIA 455 565 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2783 Sed-Chr4:39872829 Sed05g2921 Sed-Chr5:40135434 2.30E-216 dispersed
Sed04g2783 Sed-Chr4:39872829 Sed07g2426 Sed-Chr7:40089513 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79058 PF12819 Malectin_like 1.50E-25 CL0202 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2783 - - - 0.0