Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2798 ATGGTGGGCTCTGATGAGGACTCTGCTACTTCTGGGCCAGCCGTGCAGCTTTCGGGTGGCAATCGGAAATTGTTCTGGCGCTCGGCCTCATGGTCTGCATCACGTTCCTCCCTTCACCATCCTGAGCTGAACAAAGATGGTGGAGACCCGAATGGGAATCTTGGTGATAGTAATGGACCAGCCCGAAATTTTCATGCTCCGTTAACTCCAAGATCACAGCAGCATTGCAAAGCGAGGTCGTGTTTGCCTCCTTTACAGCCTCTGTCGATAGCTAGGCGAAGCTTGGATGAATGGCCGAAGGCGGGGTCAGATGATATAGGCGAGTGGCCTCAACCTCCTACTCCGAGTGGCAGGGGAAATGGGGAGAGGTTGAAACTTGATTTGTCGTCAATTGAGAGAAACCCGGATAAGAATTGTGGGCTTGTGAAGAGGGATAAGATTGCTTTCTTTGACAAAGAGTGTTCGAAAGTGGCGGAACATGTATATCTCGGTGGGGATGCTGTTGCTCGAGATAGGGATATACTTAAACAGAATGGAATTACTCATGTCTTGAATTGTGTAGGTTTCGTTTGCCCGGAGTACTTCAAAGATGATTTTGTGTACAGAACTTTGTGGTTGCAGGATAGCCCATCTGAGGATATTACTAGTATTCTCTATGATGTTTTTGACTACTTCGAAGATATTCGAGAGCAAAGTGGAAGGGTTTTTGTTCATTGTTGCCAGGGAGTATCTCGTTCCACGTCCTTGGTGATTGCCTACCTGATGTGGAGAGAAGAGCAGAGTTTTGATGATGCATTTCAATATGTGAAGGCAGCAAGAGGTATTGCAGATCCAAATATGGGTTTTGCTTGCCAGTTATTACAGTGCCAAAAGAGGGTCCATGCTTTCCCTCTTAGCCCAAGTTCACTGTTGAGGATGTATAGAGTTGCCCCACACTCACCATATGATCCTTTGCATTTGGTTCCCAAAATGTTGAATGATCCTTCACTCTCTGCTCTGGATTCTAGAGGTGCTTTTATCATTCATATTCCATCTGCCATATTTATTTGGATTGGTAAGAACTGTGAAGCAATCATGGAAAGGGATGCAAGGGGAGCTGTTGTCCAGATTGTTCGGTATGAGAGAGTGCAAGGGCCTATATACGTGATTAAGGAAGGAGAAGAACCAGCATACTTTTGGGATTCTTTTGCAAACCTGTTACCTTTAATGGATAAATCCAACAATAAAACCAATCTTGGGGAATTAAGAGGTAAGCCTTATCCAGGCGAGAGGAAAGTTGATGCCTTTGATGTGGATTTTGAAATTTTCCAGAAGGCTATTACTGGTGGTTTTGTTCCTCCATTTCCTTCGTCTGAGAACAAGCATGAAACCCATCTTCCTGTTAGAGAAAGCAGTTGGAGTATGCTTAGGCGCAAGTTTGCCTCTGGGAATATGAAGGATTTTGTATCAGCTCCTCGAGCATCTCTCTCTAGGGCCTATTCAGACTCGTTGATGATGGTGCATTTTTCTGCGAAATCTTCATCGCCTTCGGCATTTTCCTTGTCTTCATCATCATCTTCACCTAACTATCTTTCTCCAGATTCCCTCTCTTCTGATTCAAGTTCAAGTTCAAGTTCCAAGTATTTTTCAGAATCCTCTTTAGATTCTCCATCTGGATCTTCACCTTCAATTCCAGTTTCTTCATCTCTTTCTAGTTTTTCTAACTTATCACTTATCTCATCCAATAGTTCCTTAGAATCTGTGCCCAATGGTCCAGAAACTCGTGATGCAATCCCTTTGGAATCAAGTTCTCACTCATTCTCATTCCCATCCAAAAATTTCTCACCTTCTCTTGCAGAACGGCGAGGTAGTGCAAAATCTCTGATATTGCCTACAATGCCTAGTAAAATCAAAGAAACAAATAGTGCCTCAAGGTTTCTTGCCACTCAAGAAGATTGTAAGAGGAAAAACAAGATTTCTTGCCCTTTTAATGTATCAATTAAAACAAAAAATGATTCAGAACCTATAAATGAACAGACAAGTTCCATTCAGAATTTCAAGAATGTTGATAATAGAATGGATGCAAGGATAGGTAGTGTGGCTTCATGTCAGCAGGCAACTAAAGTTGATGGACAATCTGCATCCAATGGGAAGCAAGATGATGAGTTTGTCCAGCCTATGGTATACCGTTGGCCGGAGTTAGAAAAGATTGCAGCCTTTGATACAAGTTACCTCAATTCTAAGGCTGCTGTAGTGATTTTCTCTCCTAGTAGGTATTTAGGCAAGAAGGATCACATGTTGCTGTATATTTGGGTAGGAAGTTCTTTTGACCATGATTTATCTCAGGTTCAAGTAAAGAGGGATAAAGACTTGGTTGATTTAGAAAAGATAGACTGGGTTAAAGTTGGTCAATATGTACTTACTGAAATAGGCCTGCCAGAAAATACAGAAATTAAGATTGTTAAAGAAGGCGAAGAAGCAGATGAATTTCTTGCACGATTGAGTCTGTTGAGCCACTGCTAA 2502 42.29 MVGSDEDSATSGPAVQLSGGNRKLFWRSASWSASRSSLHHPELNKDGGDPNGNLGDSNGPARNFHAPLTPRSQQHCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTPSGRGNGERLKLDLSSIERNPDKNCGLVKRDKIAFFDKECSKVAEHVYLGGDAVARDRDILKQNGITHVLNCVGFVCPEYFKDDFVYRTLWLQDSPSEDITSILYDVFDYFEDIREQSGRVFVHCCQGVSRSTSLVIAYLMWREEQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRVAPHSPYDPLHLVPKMLNDPSLSALDSRGAFIIHIPSAIFIWIGKNCEAIMERDARGAVVQIVRYERVQGPIYVIKEGEEPAYFWDSFANLLPLMDKSNNKTNLGELRGKPYPGERKVDAFDVDFEIFQKAITGGFVPPFPSSENKHETHLPVRESSWSMLRRKFASGNMKDFVSAPRASLSRAYSDSLMMVHFSAKSSSPSAFSLSSSSSSPNYLSPDSLSSDSSSSSSSKYFSESSLDSPSGSSPSIPVSSSLSSFSNLSLISSNSSLESVPNGPETRDAIPLESSSHSFSFPSKNFSPSLAERRGSAKSLILPTMPSKIKETNSASRFLATQEDCKRKNKISCPFNVSIKTKNDSEPINEQTSSIQNFKNVDNRMDARIGSVASCQQATKVDGQSASNGKQDDEFVQPMVYRWPELEKIAAFDTSYLNSKAAVVIFSPSRYLGKKDHMLLYIWVGSSFDHDLSQVQVKRDKDLVDLEKIDWVKVGQYVLTEIGLPENTEIKIVKEGEEADEFLARLSLLSHC 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 40003050 40007264 + Sed0003077.1 Sed04g2798 711401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2798 833 MobiDBLite consensus disorder prediction 1 21 - -
Sed04g2798 833 Gene3D Protein tyrosine phosphatase superfamily 141 295 IPR029021 -
Sed04g2798 833 ProSiteProfiles Dual specificity protein phosphatase domain profile. 153 295 IPR020422 GO:0006470(InterPro)
Sed04g2798 833 SMART VILL_6 302 399 IPR007122 GO:0051015(InterPro)
Sed04g2798 833 MobiDBLite consensus disorder prediction 100 122 - -
Sed04g2798 833 CDD DSP 154 288 - -
Sed04g2798 833 MobiDBLite consensus disorder prediction 590 613 - -
Sed04g2798 833 SUPERFAMILY Actin depolymerizing proteins 300 401 - -
Sed04g2798 833 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 294 IPR029021 -
Sed04g2798 833 Pfam Dual specificity phosphatase, catalytic domain 161 291 IPR000340 GO:0016311(InterPro)
Sed04g2798 833 PANTHER MKPA PROTEIN 14 825 - -
Sed04g2798 833 ProSitePatterns Tyrosine specific protein phosphatases active site. 237 247 IPR016130 GO:0016311(InterPro)
Sed04g2798 833 MobiDBLite consensus disorder prediction 35 77 - -
Sed04g2798 833 SMART dsp_5 153 292 IPR020422 GO:0006470(InterPro)
Sed04g2798 833 MobiDBLite consensus disorder prediction 575 613 - -
Sed04g2798 833 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 212 273 IPR000387 GO:0016311(InterPro)
Sed04g2798 833 Gene3D Severin 304 399 IPR029006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2798 Sed-Chr4:40003050 Sed04g2799 Sed-Chr4:40003050 0.00E+00 tandem
Sed04g0575 Sed-Chr4:4402504 Sed04g2798 Sed-Chr4:40003050 8.30E-156 transposed
Sed04g2798 Sed-Chr4:40003050 Sed07g2453 Sed-Chr7:40280447 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2798 - - - 0.0