Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2818 ATGTCTTTCCAGCATAAAAGCTTTTGGATACCTAGGGATGCTGGATGTTTACCTGATGGAGATATGAACTATGATAACTCCTCCAGAATTGAAAACAAGCGTAGCCATCAATGGTTTATGGATGGCAGTGCACCGGAGCTATTCAGTAGCAAGAAACAAGCAATAGAAGCGATAAATACTAGACCTGTTCCAGGAGTTCCACACATGAATGTTTCTCACTGGGAAAACACTTCAAGCTTTCAGTCAGTTCCTGTGCCCTTCACTGATCGCCTCTTTGGCTCAGAGCCAATACGAACTGTCAATTTGGTTGATCGAGGCATCACTGTAGGAAATGTGAATATGGAAATGGGAAGAAGGGAGTTTGAGAATCATTTTGCAAACAACCCGCCAGTTGGCTTGTCCATGTCTCAATCCATTGAAGATTCCTCATCATGCCTCAATTTTGGTGGGATTAGAAAAATTAAAGTCAATCAAGTCAGGGATCCTGATGTTGGCATGGCTGCCTCTTTGGGACATGCGTATAACAGGGATGATAACGGCACAGTTTCAATGGGTACAACGTTCACCAAAAATCTTGAAAACGCCATATCATTGGGCCAAACGTATAATAGTAGAGATGAAAACAGCATCTCGGTTGGCCCTGCATATCACAAGGCAGATGGCAATTTTATTTCAATGGGTCATGCTTTTACCAAGGGTGATGGAAATTTTATTACAATTGGTCATAATAACTATAGCAAAGGAGACAATAGCATCCTAACAATGAGTCAGCCTTTTGACAAGAGGGATGACTCTTTTATGCCGATGGGCCAGTCTTATGAGAAGGCAGAAGGCAATATCATTTCTTTTGGTGCCTCCTACAATAAAGGGCACGGAAGTTTTATCTCTATGGGGCCAACATATAGCAAGGCTGGCGACACTTTTATTTCAATGACTTCCTCATATAATAAGGGAAATGATGATAGCTTATCAATGGGTCCAACCTATGACAAGGTCAACTCTGATATTTTACATGTGGGTCCTAAATATGATAAAGCCGATTCTGGTGCTGTGCCTATGGCTCAGAACTATCATAAGGGTGGGAGTAATACGATATCTTTTGGAGGTTTTGATGATGAAAATAGGGCAGATAATCCTTCTGGTGGGATTATTAGCAATTACGACTTGTTGATGGCTAATCAGGCTTCTGCCCAAGGATCAGCAATGTCAACACTGAGAGATTCAATTGATCCTAACGTGGAAGTAAACATTAACAATGCCACAAAAGTTGATGTTAAAATTGATGCAAGTTCCAAGAATAAAGAGCCTAGGTCGACCAAGAGGGTGCCACCAAATAGCTTCCCTTCAAATGTTAAAAGCTTGCTCTCAACTGGTATGCTCGATGGGGTTCCTGTGAAATATGTTTCTTGGTCACGGGAGAAAAATCTCAAGGGAGTTATAAAAGGGACTGGATATTTGTGCAGCTGTGACAACTGCAACCACTCTAAGGCTCTCAATGCTTATGAATTTGAGAGGCACGCTGGCTGCAAAACCAAACATCCAAATAATCACATTTATTTTGAGAATGGTAAAACTATCTATGCTGTCGTTCAAGAGCTAAAGAACACCCCTCAGGAGTTGCTATTTGATGCAATTCAGAATGTGACTGGCTCTCCCATTAATCAGAAGAATTTTCGTATCTGGAAAGCATCTTATCAAGCTGCCACCCTTGAACTCCAGCGTATTTATGGAAAAGATGCAGTAGCTATGCCTTCTTGA 1758 41.41 MSFQHKSFWIPRDAGCLPDGDMNYDNSSRIENKRSHQWFMDGSAPELFSSKKQAIEAINTRPVPGVPHMNVSHWENTSSFQSVPVPFTDRLFGSEPIRTVNLVDRGITVGNVNMEMGRREFENHFANNPPVGLSMSQSIEDSSSCLNFGGIRKIKVNQVRDPDVGMAASLGHAYNRDDNGTVSMGTTFTKNLENAISLGQTYNSRDENSISVGPAYHKADGNFISMGHAFTKGDGNFITIGHNNYSKGDNSILTMSQPFDKRDDSFMPMGQSYEKAEGNIISFGASYNKGHGSFISMGPTYSKAGDTFISMTSSYNKGNDDSLSMGPTYDKVNSDILHVGPKYDKADSGAVPMAQNYHKGGSNTISFGGFDDENRADNPSGGIISNYDLLMANQASAQGSAMSTLRDSIDPNVEVNINNATKVDVKIDASSKNKEPRSTKRVPPNSFPSNVKSLLSTGMLDGVPVKYVSWSREKNLKGVIKGTGYLCSCDNCNHSKALNAYEFERHAGCKTKHPNNHIYFENGKTIYAVVQELKNTPQELLFDAIQNVTGSPINQKNFRIWKASYQAATLELQRIYGKDAVAMPS 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 40121698 40127347 + Sed0020075.1 Sed04g2818 711421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2818 585 MobiDBLite consensus disorder prediction 428 448 - -
Sed04g2818 585 PANTHER AUTOIMMUNE REGULATOR 6 567 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Sed04g2818 585 Pfam Tify domain binding domain 478 533 IPR032308 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2818 Sed-Chr4:40121698 Sed07g2463 Sed-Chr7:40387145 2.70E-182 dispersed
Sed04g2818 Sed-Chr4:40121698 Sed04g2819 Sed-Chr4:40121698 2.10E-219 tandem
Sed04g2818 Sed-Chr4:40121698 Sed05g2940 Sed-Chr5:40260929 3.70E-75 wgd
Sed04g2818 Sed-Chr4:40121698 Sed07g2462 Sed-Chr7:40387145 8.40E-176 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2818 - - - 0.0