Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2819 ATGTCTTTCCAGCATAAAAGCTTTTGGATACCTAGGGATGCTGGATGTTTACCTGATGGAGATATGAACTATGATAACTCCTCCAGAATTGAAAACAAGCGTAGCCATCAATGGTTTATGGATGGCAGTGCACCGGAGCTATTCAGTAGCAAGAAACAAGCAATAGAAGCGATAAATACTAGACCTGTTCCAGGAGTTCCACACATGAATGTTTCTCACTGGGAAAACACTTCAAGCTTTCAGTCAGTTCCTGTGCCCTTCACTGATCGCCTCTTTGGCTCAGAGCCAATACGAACTGTCAATTTGGTTGATCGAGGCATCACTGTAGGAAATGTGAATATGGAAATGGGAAGAAGGGAGTTTGAGAATCATTTTGCAAACAACCCGCCAGTTGGCTTGTCCATGTCTCAATCCATTGAAGATTCCTCATCATGCCTCAATTTTGGTGGGATTAGAAAAATTAAAGTCAATCAAGTCAGGGATCCTGATGTTGGCATGGCTGCCTCTTTGGGACATGCGTATAACAGGGATGATAACGGCACAGTTTCAATGGGTACAACGTTCACCAAAAATCTTGAAAACGCCATATCATTGGGCCAAACGTATAATAGTAGAGATGAAAACAGCATCTCGGTTGGCCCTGCATATCACAAGGCAGATGGCAATTTTATTTCAATGGGTCATGCTTTTACCAAGGGTGATGGAAATTTTATTACAATTGGTCATAATAACTATAGCAAAGGAGACAATAGCATCCTAACAATGAGTCAGCCTTTTGACAAGAGGGATGACTCTTTTATGCCGATGGGCCAGTCTTATGAGAAGGCAGAAGGCAATATCATTTCTTTTGGTGCCTCCTACAATAAAGGGCACGGAAGTTTTATCTCTATGGGGCCAACATATAGCAAGGCTGGCGACACTTTTATTTCAATGACTTCCTCATATAATAAGGGAAATGATGATAGCTTATCAATGGGTCCAACCTATGACAAGGTCAACTCTGATATTTTACATGTGGGTCCTAAATATGATAAAGCCGATTCTGGTGCTGTGCCTATGGCTCAGAACTATCATAAGGGTGGGAGTAATACGATATCTTTTGGAGGTTTTGATGATGAAAATAGGGCAGATAATCCTTCTGGTGGGATTATTAGCAATTACGACTTGTTGATGGCTAATCAGGCTTCTGCCCAAGGATCAGCAATGTCAACACTGAGAGATTCAATTGATCCTAACGTGGAAGTAAACATTAACAATGCCACAAAAGTTGATGTTAAAATTGATGCAAGTTCCAAGAATAAAGAGCCTAGGTCGACCAAGAGGGTGCCACCAAATAGCTTCCCTTCAAATGTTAAAAGCTTGCTCTCAACTGGTATGCTCGATGGGGTTCCTGTGAAATATGTTTCTTGGTCACGGGAGAAAAATCTCAAGGGAGTTATAAAAGGGACTGGATATTTGTGCAGCTGTGACAACTGCAACCACTCTAAGGCTCTCAATGCTTATGAATTTGAGAGGCACGCTGGCTGCAAAACCAAACATCCAAATAATCACATTTATTTTGAGAATGGTAAAACTATCTATGCTGTCGTTCAAGAGCTAAAGAACACCCCTCAGGAGTTGCTATTTGATGCAATTCAGAATGTGACTGGCTCTCCCATTAATCAGAAGAATTTTCGTATCTGGAAAGCATCTTATCAAGCTGCCACCCTTGAACTCCAGCGTATTTATGGAAAAGATGCAGTAGCTATGCCTTCTTGA 1758 41.41 MSFQHKSFWIPRDAGCLPDGDMNYDNSSRIENKRSHQWFMDGSAPELFSSKKQAIEAINTRPVPGVPHMNVSHWENTSSFQSVPVPFTDRLFGSEPIRTVNLVDRGITVGNVNMEMGRREFENHFANNPPVGLSMSQSIEDSSSCLNFGGIRKIKVNQVRDPDVGMAASLGHAYNRDDNGTVSMGTTFTKNLENAISLGQTYNSRDENSISVGPAYHKADGNFISMGHAFTKGDGNFITIGHNNYSKGDNSILTMSQPFDKRDDSFMPMGQSYEKAEGNIISFGASYNKGHGSFISMGPTYSKAGDTFISMTSSYNKGNDDSLSMGPTYDKVNSDILHVGPKYDKADSGAVPMAQNYHKGGSNTISFGGFDDENRADNPSGGIISNYDLLMANQASAQGSAMSTLRDSIDPNVEVNINNATKVDVKIDASSKNKEPRSTKRVPPNSFPSNVKSLLSTGMLDGVPVKYVSWSREKNLKGVIKGTGYLCSCDNCNHSKALNAYEFERHAGCKTKHPNNHIYFENGKTIYAVVQELKNTPQELLFDAIQNVTGSPINQKNFRIWKASYQAATLELQRIYGKDAVAMPS 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 40121698 40127347 + Sed0020075.2 Sed04g2819 711422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2819 585 MobiDBLite consensus disorder prediction 428 448 - -
Sed04g2819 585 PANTHER AUTOIMMUNE REGULATOR 6 567 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Sed04g2819 585 Pfam Tify domain binding domain 478 533 IPR032308 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2819 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2819 Sed-Chr4:40121698 Sed07g2463 Sed-Chr7:40387145 2.70E-182 dispersed
Sed04g2818 Sed-Chr4:40121698 Sed04g2819 Sed-Chr4:40121698 2.10E-219 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g1413 . 26 689 PHD Transcription Factor Family AT2G36720 53.2 2.9e-200 696.8
Sed02g0694 . 25 841 PHD Transcription Factor Family AT3G53680 53.0 8.5e-246 847.8
Sed02g0695 . 25 841 PHD Transcription Factor Family AT3G53680 53.0 8.5e-246 847.8
Sed04g1286 . 19 820 PHD Transcription Factor Family AT3G53680 52.7 1.4e-240 830.5
Sed04g1287 . 19 820 PHD Transcription Factor Family AT3G53680 52.7 1.4e-240 830.5
Sed04g1288 . 19 820 PHD Transcription Factor Family AT3G53680 52.7 1.4e-240 830.5
Sed04g1413 . 228 685 PHD Transcription Factor Family AT3G53680 52.6 2.5e-136 484.2
Sed05g2940 . 313 451 PHD Transcription Factor Family AT3G53680 51.1 9.9e-37 153.3
Sed04g2818 . 440 566 PHD Transcription Factor Family AT3G53680 53.5 2.2e-36 152.1
Sed04g2819 . 440 566 PHD Transcription Factor Family AT3G53680 53.5 2.2e-36 152.1
Sed07g2464 . 435 563 PHD Transcription Factor Family AT3G53680 53.5 4.9e-36 151.0
Sed05g2941 . 313 448 PHD Transcription Factor Family AT3G53680 50.7 4.9e-36 151.0
Sed07g2462 . 426 555 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed07g2463 . 435 564 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed07g2465 . 435 564 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed07g2466 . 426 555 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed07g2467 . 426 555 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed12g1554 . 251 395 PHD Transcription Factor Family AT5G12400 52.3 1.2e-38 160.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003985 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 1 0 44