Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2820 ATGGAGAGTTTTGTAAGGTGTCTTAAATTGTCAAAGCCATATGTTATAGTTATTTTTATGCGGTTTGGGTATGCTGGAATGACAATACTTGCAAAGTCAGCTTTAGACAAAGGGATGAGCCAACATGTTTTCGTGGTTTATCGTCATGTTGTTGCTACTCTCCTCATATCTCCTTTTGCCTTTGTCTTTGACAGGAGGGCGAGACCAAAGATGACCTTTTCGGTGTTTTGGAAGATTGTAGTGCTGGGTCTTTTAGAACCGGTGATCGATCAGAACTTGTATTTTAGTGGTATGAAGCTCACAACAGCAACATTTACAGCTACCATGTCCAATATTCTACCAGCTTCTTCATTCCTTGTGGCTTGGGCTTGCAGGCTTGAGAAAGTGAATATTTTGAAAAGGGAAAGCCAAGCAAAAATCTTAGGAACCATAGTGACAGTTGGAGGAGCCATGATTATGACATTGACAAGAGGGCCAATGTTGAGTCTACCATGGACAAAACGCAACCAGCCCACTGCTTCTTCAACTGCTTATCACCAAAGCCCACTCAAAGGCTCACTTATGATTGTAATTGGCTGCATTTGCTGGTCAGCTTTCATGTCTCTTCAGGCAATTACGTTGAAAGCGTACCCGACGGATTTGTCGCTTACGGCATTGATATGCTTGGTGGGAACCATTGGAGGCTCTGGGGTGGCTTTGGTCATGGAAAGGGGGAACCCTGCTGCTTGGGCTCTGCACTTTGACAGACAACTCTTGGTTGTGGTTTATACTGGAATAATATGTTCAGGAGTAGCTTATTATATTCAAGGAATTGCGATGAAAATAAAAGGACCTGTTTTTGTGACAGCATTCAGTCCTCTGACCATGATTCTTGTTGCAATCGCGAGTTCCTTTCTATTGTCTGAGATAATGTTCTTGGGAAGGATTATTGGAGCTGTGGTCATTATCATCGGCTTGTATATGGTTTTGTGGGGAAAAAGAAAAGACCAGATTTCAGTTGGTGAATCAGGTTGTGATCAGAAAACACATCGTGAGAAACCAACGACCGAAAATGATTGCGCTTCGATGACGATGATTCAGTCAAATGAGGAGCTTGTGGTGGTTAATATTGCCAAAGAGGAGACAAATTGA 1131 42.53 MESFVRCLKLSKPYVIVIFMRFGYAGMTILAKSALDKGMSQHVFVVYRHVVATLLISPFAFVFDRRARPKMTFSVFWKIVVLGLLEPVIDQNLYFSGMKLTTATFTATMSNILPASSFLVAWACRLEKVNILKRESQAKILGTIVTVGGAMIMTLTRGPMLSLPWTKRNQPTASSTAYHQSPLKGSLMIVIGCICWSAFMSLQAITLKAYPTDLSLTALICLVGTIGGSGVALVMERGNPAAWALHFDRQLLVVVYTGIICSGVAYYIQGIAMKIKGPVFVTAFSPLTMILVAIASSFLLSEIMFLGRIIGAVVIIIGLYMVLWGKRKDQISVGESGCDQKTHREKPTTENDCASMTMIQSNEELVVVNIAKEETN 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 40128616 40134669 - Sed0001405.1 Sed04g2820 711423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2820 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 243 328 - -
Sed04g2820 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 157 - -
Sed04g2820 376 PANTHER WAT1-RELATED PROTEIN 15 340 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed04g2820 376 Pfam EamA-like transporter family 14 153 IPR000620 GO:0016020(InterPro)
Sed04g2820 376 Pfam EamA-like transporter family 184 323 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2820 Sed-Chr4:40128616 Sed07g2469 Sed-Chr7:40415188 5.60E-157 dispersed
Sed04g2820 Sed-Chr4:40128616 Sed04g2821 Sed-Chr4:40145493 4.60E-167 tandem
Sed14g0458 Sed-Chr14:4628729 Sed04g2820 Sed-Chr4:40128616 1.50E-106 wgd
Sed03g0062 Sed-Chr3:378573 Sed04g2820 Sed-Chr4:40128616 6.40E-103 wgd
Sed03g2986 Sed-Chr3:46697725 Sed04g2820 Sed-Chr4:40128616 1.40E-107 wgd
Sed04g2820 Sed-Chr4:40128616 Sed07g2468 Sed-Chr7:40394864 1.70E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2820 - - - 0.0