Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2835 ATGGCGGCAATTTCCATTTCTCTTCTCGCTATTCTCCTCTCGCTGCTCGCCGTCGACGCTAGGATTCCCGGAGTTTACTCCGGCGGCCAGTGGCAGACCGCTCATGCTACTTTTTACGGCGGCGGTGACGCCTCTGGAACTATGGGAGGCGCTTGCGGTTACGGAAACCTGTACAGCCAAGGCTATGGCGTGAACACGGCGGCGTTGAGCACTGCTCTGTTCAACAACGGCTTAAGCTGCGGAGCTTGCTTCGAGCTCAAGTGCATTGACGATCCGCAGTGGTGCCATGCCGGCAGGCCGTCGATTTTCATCACCGCCACCAACTTTTGCCCTCCCAACTACGCTCTTCCGAGCGACGACGGCGGCTGGTGCAACCCTCCCCGTCCTCATTTCGACCTCGCCATGCCTATGTTCCTCCAGATTGCCGAGTACAGAGCCGGAATCGTCCCAGTCTCCTACCGCAGGGTGCCATGCCGGAAACAGGGAGGAATCAGGTTCACAATAAACGGGTTCCAATACTTCAACTTGATACTGATCACGAACGTGGGAGGCGCAGGGGACATAGTGAAGGCGAGCGTGAAAGGCAGCAACACAGAGTGGATGAGGCTGACCCGAAACTGGGGCCAAAACTGGCAGTCCAACACCGTTTTGGTTGGTCAGTCACTGTCGTTCAGGGTCACGGGCAGTGACCGGCGCACCACTACGTCCTGGAACATCGCCCCCTCCAATTGGCAATTTGGCCAGACCTTCACCGGCAGGAATTTCAGGGTCTGA 774 57.62 MAAISISLLAILLSLLAVDARIPGVYSGGQWQTAHATFYGGGDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCIDDPQWCHAGRPSIFITATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLQIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFQYFNLILITNVGGAGDIVKASVKGSNTEWMRLTRNWGQNWQSNTVLVGQSLSFRVTGSDRRTTTSWNIAPSNWQFGQTFTGRNFRV 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 40265268 40268252 - Sed0018969.1 Sed04g2835 711438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2835 257 Gene3D - 19 159 IPR036908 -
Sed04g2835 257 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Sed04g2835 257 Pfam Lytic transglycolase 66 153 IPR009009 -
Sed04g2835 257 PANTHER EXPANSIN-A15 9 255 IPR002963 GO:0009664(InterPro)
Sed04g2835 257 FunFam Expansin 163 255 - -
Sed04g2835 257 SMART dpbb_1 66 153 IPR007112 -
Sed04g2835 257 PRINTS Expansin signature 121 138 IPR002963 GO:0009664(InterPro)
Sed04g2835 257 PRINTS Expansin signature 102 112 IPR002963 GO:0009664(InterPro)
Sed04g2835 257 PRINTS Expansin signature 138 151 IPR002963 GO:0009664(InterPro)
Sed04g2835 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664(InterPro)
Sed04g2835 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664(InterPro)
Sed04g2835 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664(InterPro)
Sed04g2835 257 PRINTS Expansin signature 88 99 IPR002963 GO:0009664(InterPro)
Sed04g2835 257 PRINTS Expansin signature 174 195 IPR002963 GO:0009664(InterPro)
Sed04g2835 257 PRINTS Expansin signature 162 174 IPR002963 GO:0009664(InterPro)
Sed04g2835 257 FunFam Expansin 20 159 - -
Sed04g2835 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576(InterPro)
Sed04g2835 257 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576(InterPro)
Sed04g2835 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576(InterPro)
Sed04g2835 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576(InterPro)
Sed04g2835 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576(InterPro)
Sed04g2835 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576(InterPro)
Sed04g2835 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Sed04g2835 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 163 IPR007112 -
Sed04g2835 257 CDD DPBB_EXPA_N 30 158 - -
Sed04g2835 257 Gene3D - 163 255 IPR036749 -
Sed04g2835 257 SUPERFAMILY Barwin-like endoglucanases 30 181 IPR036908 -
Sed04g2835 257 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2835 Sed-Chr4:40265268 Sed13g1396 Sed-Chr13:19376925 4.00E-122 dispersed
Sed01g1092 Sed-Chr1:8212684 Sed04g2835 Sed-Chr4:40265268 2.70E-121 wgd
Sed14g0493 Sed-Chr14:4867194 Sed04g2835 Sed-Chr4:40265268 8.40E-128 wgd
Sed03g0096 Sed-Chr3:584840 Sed04g2835 Sed-Chr4:40265268 1.10E-119 wgd
Sed04g2835 Sed-Chr4:40265268 Sed05g2978 Sed-Chr5:40441191 4.90E-128 wgd
Sed04g2835 Sed-Chr4:40265268 Sed07g2495 Sed-Chr7:40621356 2.00E-134 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2835 - - - 0.0