Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2846 ATGGCAAATCGATGGTGGGCTGAAAATATACCCACTGCCACAGACAGCTGCACCGGCAACCCTTATTCCACTCCATTAAAGCAAAACTTGGAAGTTGCAGATGAAGAGAACAACTCTGGCAGCCATGAGATAGTTGAACCAGGCACAAGCTCCAGCATTCGTCGCCCTCGAGGCCGTCCGTCGGGATCCAAAAACAAGCCGAAGCCACCAGTGGTGGTCACCAAAGAGAGCCCTGATACCCTCCAGAGCCACGTTTTGGAGATTGGCAGTGGCAGCGACATTGTCGAAAGCATTTCGAACTACGCCCATCGCCAGCAGCGAGGGGTTTCAGTCATCAGCGGTAATGGGGTTGTCGCCAATGTCACTCTCCGGCATCCAGCTGCCCCCGGTGGCATTATTACCCTGCAGGGCCGATTCGACATATTGTCGCTTTCTGGTGCTTTCTTGCCTGCACCAGCTCCACCAGGAGCTACAGGGTTAACAGTCTACTTAGCTGGTGGGCAAGGGCAGGTCGTTGGTGGCATTGTCGTTGGTGCACTCGTTGCCACCGGTCCGGTTATCGTCATTGCTGCTACTTTCACCAATGCAACATTCGAGCGACTGCCAGTCGAGGATGGGGAGGAGGCGGCCCCAGCCGAAGACAAGTCTGGAAATAGCCAAAACAATTCAAATCCTCAGAAAATGGAAGAGCAGCATCAACAGCCACAGCATCAACAACCTTCAATAGGAGTTTACAACATGGCTTCAAATTTGGTGCCAAATGGCCAGGTTACTTCTCATGATGTATTTTGGAGTCCTCCTAGAGCCCCTCCTCCATTTTAA 822 52.43 MANRWWAENIPTATDSCTGNPYSTPLKQNLEVADEENNSGSHEIVEPGTSSSIRRPRGRPSGSKNKPKPPVVVTKESPDTLQSHVLEIGSGSDIVESISNYAHRQQRGVSVISGNGVVANVTLRHPAAPGGIITLQGRFDILSLSGAFLPAPAPPGATGLTVYLAGGQGQVVGGIVVGALVATGPVIVIAATFTNATFERLPVEDGEEAAPAEDKSGNSQNNSNPQKMEEQHQQPQHQQPSIGVYNMASNLVPNGQVTSHDVFWSPPRAPPPF 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 40359313 40361411 - Sed0017250.1 Sed04g2846 711449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2846 273 MobiDBLite consensus disorder prediction 214 261 - -
Sed04g2846 273 MobiDBLite consensus disorder prediction 1 80 - -
Sed04g2846 273 MobiDBLite consensus disorder prediction 42 58 - -
Sed04g2846 273 PIRSF ESCAROLA 13 271 IPR014476 GO:0003680(InterPro)
Sed04g2846 273 Pfam Plants and Prokaryotes Conserved (PCC) domain 83 194 IPR005175 -
Sed04g2846 273 MobiDBLite consensus disorder prediction 205 273 - -
Sed04g2846 273 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 206 - -
Sed04g2846 273 MobiDBLite consensus disorder prediction 9 35 - -
Sed04g2846 273 FunFam AT-hook motif nuclear-localized protein 81 208 - -
Sed04g2846 273 Gene3D - 82 209 - -
Sed04g2846 273 ProSiteProfiles PPC domain profile profile. 76 213 IPR005175 -
Sed04g2846 273 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 270 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed04g2846 273 CDD DUF296 84 165 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2846 Sed-Chr4:40359313 Sed07g2505 Sed-Chr7:40768217 6.10E-121 dispersed
Sed04g2846 Sed-Chr4:40359313 Sed04g2847 Sed-Chr4:40359313 1.90E-146 tandem
Sed04g2846 Sed-Chr4:40359313 Sed07g2504 Sed-Chr7:40768217 6.10E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2846 - - - 0.0