Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g2846 | ATGGCAAATCGATGGTGGGCTGAAAATATACCCACTGCCACAGACAGCTGCACCGGCAACCCTTATTCCACTCCATTAAAGCAAAACTTGGAAGTTGCAGATGAAGAGAACAACTCTGGCAGCCATGAGATAGTTGAACCAGGCACAAGCTCCAGCATTCGTCGCCCTCGAGGCCGTCCGTCGGGATCCAAAAACAAGCCGAAGCCACCAGTGGTGGTCACCAAAGAGAGCCCTGATACCCTCCAGAGCCACGTTTTGGAGATTGGCAGTGGCAGCGACATTGTCGAAAGCATTTCGAACTACGCCCATCGCCAGCAGCGAGGGGTTTCAGTCATCAGCGGTAATGGGGTTGTCGCCAATGTCACTCTCCGGCATCCAGCTGCCCCCGGTGGCATTATTACCCTGCAGGGCCGATTCGACATATTGTCGCTTTCTGGTGCTTTCTTGCCTGCACCAGCTCCACCAGGAGCTACAGGGTTAACAGTCTACTTAGCTGGTGGGCAAGGGCAGGTCGTTGGTGGCATTGTCGTTGGTGCACTCGTTGCCACCGGTCCGGTTATCGTCATTGCTGCTACTTTCACCAATGCAACATTCGAGCGACTGCCAGTCGAGGATGGGGAGGAGGCGGCCCCAGCCGAAGACAAGTCTGGAAATAGCCAAAACAATTCAAATCCTCAGAAAATGGAAGAGCAGCATCAACAGCCACAGCATCAACAACCTTCAATAGGAGTTTACAACATGGCTTCAAATTTGGTGCCAAATGGCCAGGTTACTTCTCATGATGTATTTTGGAGTCCTCCTAGAGCCCCTCCTCCATTTTAA | 822 | 52.43 | MANRWWAENIPTATDSCTGNPYSTPLKQNLEVADEENNSGSHEIVEPGTSSSIRRPRGRPSGSKNKPKPPVVVTKESPDTLQSHVLEIGSGSDIVESISNYAHRQQRGVSVISGNGVVANVTLRHPAAPGGIITLQGRFDILSLSGAFLPAPAPPGATGLTVYLAGGQGQVVGGIVVGALVATGPVIVIAATFTNATFERLPVEDGEEAAPAEDKSGNSQNNSNPQKMEEQHQQPQHQQPSIGVYNMASNLVPNGQVTSHDVFWSPPRAPPPF | 273 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 40359313 | 40361411 | - | Sed0017250.1 | Sed04g2846 | 711449 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g2846 | 273 | MobiDBLite | consensus disorder prediction | 214 | 261 | - | - | |
Sed04g2846 | 273 | MobiDBLite | consensus disorder prediction | 1 | 80 | - | - | |
Sed04g2846 | 273 | MobiDBLite | consensus disorder prediction | 42 | 58 | - | - | |
Sed04g2846 | 273 | PIRSF | ESCAROLA | 13 | 271 | IPR014476 | GO:0003680(InterPro) | |
Sed04g2846 | 273 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 83 | 194 | IPR005175 | - | |
Sed04g2846 | 273 | MobiDBLite | consensus disorder prediction | 205 | 273 | - | - | |
Sed04g2846 | 273 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 79 | 206 | - | - | |
Sed04g2846 | 273 | MobiDBLite | consensus disorder prediction | 9 | 35 | - | - | |
Sed04g2846 | 273 | FunFam | AT-hook motif nuclear-localized protein | 81 | 208 | - | - | |
Sed04g2846 | 273 | Gene3D | - | 82 | 209 | - | - | |
Sed04g2846 | 273 | ProSiteProfiles | PPC domain profile profile. | 76 | 213 | IPR005175 | - | |
Sed04g2846 | 273 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 35 | 270 | IPR014476 | GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Sed04g2846 | 273 | CDD | DUF296 | 84 | 165 | IPR005175 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g2846 | Sed-Chr4:40359313 | Sed07g2505 | Sed-Chr7:40768217 | 6.10E-121 | dispersed | |
Sed04g2846 | Sed-Chr4:40359313 | Sed04g2847 | Sed-Chr4:40359313 | 1.90E-146 | tandem | |
Sed04g2846 | Sed-Chr4:40359313 | Sed07g2504 | Sed-Chr7:40768217 | 6.10E-121 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g2846 | - | - | - | 0.0 |