Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2893 ATGGCTTCCACATATCGCGATCGGACGTCGGAGTTCCAGTCACTGTTGGAGTCACTCAAGAAGATCGGCGGAGTTGCAGCCGCCGTCGATCCCGTTCAAAATGTACAATCGCCGTCCGTACATTCTGGATCTCCGGCCTTTGCACGGTCGGGATTCACCAAGAAGGCGTCTCTTATCGGACTGGGAATCCAAGAAACCTCCCACAAGATCACCAGGCTTGCTCACTTGGCAAAAAGATCATCAATGTTTGATGATCCAATCAGGGAAATACAGGAAATGACTGCTTTGATCAAGAATGATATTTCATCATTGAATGTGGCTATCTCAGACTTGCAAACCATCCAAACGATCGAAATAAAAGAGGGGAATTATTCAGAGGATAGAGTGGTTCATTCAACTGCTGTCTGTGATGACCTGAAGAGCAAACTCATGGGAGCGACAAAACAACTTCAAAACGTGCTAACTACAAGAACAGAGAATATCAAGGCCAATGAGAGCCGGAGGAAAATATTTTCTGCAAATGCAACCAGAGAAAGTCCTTTCCAAAATCAAGCTAAAACTGTACCTCAACCTCCACCTTGGTCAAGCAATACATCCGGAAGTGCTCAATCATTCCTGCTGTCATCAAATGGAGCTCAAGTTGGGGGTCAATTGAGACGAAGGTTAGCTGTGGAGAACACCCCATCCCAGCAAATGGAGATGTCGATGTTACAGCAGGTGGTTCCAAGGCAAGAAAATTATTCCCAAAGTCGTGCTGTTGCTCTTCATAATGTCGAATCCACCATTTCAGAACTCAGTGGAATTTTTACACATCTTGCCACAATGGTAACACATCAAGGAGAACTTGCTATCAGGATTGATGACAACATGGATGAATCATTGACAAATGTAGAAGGTGCTCGAAGTGCTCTTCTTAGGAATCTTAACCAGATATCATCAAATAGATGGCTTCTCATCAAAATATTTGCTGTTTTAATTATTTTCTTGATGGTCTTTATTTTCTTGGCATAA 1011 43.22 MASTYRDRTSEFQSLLESLKKIGGVAAAVDPVQNVQSPSVHSGSPAFARSGFTKKASLIGLGIQETSHKITRLAHLAKRSSMFDDPIREIQEMTALIKNDISSLNVAISDLQTIQTIEIKEGNYSEDRVVHSTAVCDDLKSKLMGATKQLQNVLTTRTENIKANESRRKIFSANATRESPFQNQAKTVPQPPPWSSNTSGSAQSFLLSSNGAQVGGQLRRRLAVENTPSQQMEMSMLQQVVPRQENYSQSRAVALHNVESTISELSGIFTHLATMVTHQGELAIRIDDNMDESLTNVEGARSALLRNLNQISSNRWLLIKIFAVLIIFLMVFIFLA 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 40590454 40593412 + Sed0023487.1 Sed04g2893 711496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2893 336 Pfam SNARE domain 282 333 IPR000727 -
Sed04g2893 336 PANTHER SYNTAXIN 62 327 IPR045242 GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed04g2893 336 MobiDBLite consensus disorder prediction 177 201 - -
Sed04g2893 336 CDD SNARE_syntaxin5 248 333 - -
Sed04g2893 336 SUPERFAMILY t-snare proteins 49 300 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Sed04g2893 336 SMART tSNARE_6 240 307 IPR000727 -
Sed04g2893 336 Gene3D - 48 300 - -
Sed04g2893 336 ProSitePatterns Syntaxin / epimorphin family signature. 251 290 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Sed04g2893 336 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 245 307 IPR000727 -
Sed04g2893 336 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 21 IPR021538 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2893 Sed-Chr4:40590454 Sed07g2559 Sed-Chr7:41119183 4.40E-97 dispersed
Sed04g2893 Sed-Chr4:40590454 Sed07g2558 Sed-Chr7:41119183 6.10E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2893 K08490 - csv:101213786 549.28