Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g2894 | ATGGCTTTTTTCTTCTTCTTCTTCTTTTCCTCTGTTTTCGCCTCTTTTCTCTTCATCTTCCACCGGCCGGCCATATTCCGGCGAGTGCTGCTGCCGCCGGGAACTCTCGGCCTGCCGTTGATCGGAGAGACCCTCAAGCTCATCTCCGCCTACAAGACCGAGAACCCTGAACCGTTCATCGACGAACGGGTCCGCCGGTTCGGACCGGTATTCACGACCCATTTGTTTGGCGAGCCGACGGTTTTCTCTGCCGATTTTGAGACGAACCGGTTCATTCTTCAGAATGAGGAGAAGCTTTTTGAGTGTAGCTACCCCGGTTCGATTTCGAACCTGCTTGGGAAGCATTCTTTGTTGCTTATGAAAGGGAGTTTGCACAAGAGAATGCACTCTTTCACTATGAGCTTTGCCAATTCCTCCATTATTCGGGATCATCTTTTGGTCGATGTCGACCGGCTCATTCGCCTCAATTTGGAGTCTTGGACCGGCAGGATCTTCCTCTTGGAGGAGGCCAAAAAGATAACTTTTGAGTTAGCCGTGAAGCAATTGATGAGCTTTGATAGATGCGAATGGACTCAAAATCTGATGAAGGAATATCTTCTGGTCATTGAAGGATTTTTTACCGTTCCTTTCCCTCTATTTTCCCCCACTTACCGTCGAGCCATCCAGGCTCGAAGAAAGGTGGCGGAGCAATTGGGGACGGTGGTGTGGGAGAGAAGGAAAGAGATAATCGAGGGCGGAGGGAAGAGGAAAGACATGCTCGGGGCATTGCTCGCCGGGGAGGACGGGCTCTCCGACGAGAAAATAGTAGACTTCTTGCTGGCTCTATTGGTGGCGGGGTATGAAACGACGTCGACCACCATGACACTGGCCGTCAAGTTTCTCACGGAAACGCCGCTGGCTTTAGCCCAATTACAGGAAGAGCATGTGCAAATTAAAGCAAGGAAGAAGAAATCAGACCAACATCTTCAATGGAATGATTACAAGTCCATGCCTTTCACTCAATGTGTTGTGAATGAAACATTAAGAGTTGCCAACATAATCAGTGGGGTTTTTAGGAGAGCAATGACAGACGTAAATATCAAAGGTTATACAATTCCAAAGGGATGGAGGGTTTTTGCATCATTTCGTGCAGTACATTTGGACCAGGATCATTTCAAAGATGCTCGATCTTTTAACCCATGGAGATGGCAACAGCAGAGTAGCTCGATGACGGTCAATGCATTTACACCCTTCGGTGGAGGTCCGAGGCTATGCCCCGGTTATGAGCTTGCCAGAGTAGAACTCTCTGTTTTCCTTCATCATCTTGTCACCCAATTCAGTTGGGTTCCAGCAGAAGATGATAAGTTGGTGTTTTTCCCAACAACAAGAACACAGAAGAGGTATCCTATTTATGTGACATGTAAAGACGAAACTCGACAATGTAAAGACAGTAATCTGTGA | 1440 | 47.64 | MAFFFFFFFSSVFASFLFIFHRPAIFRRVLLPPGTLGLPLIGETLKLISAYKTENPEPFIDERVRRFGPVFTTHLFGEPTVFSADFETNRFILQNEEKLFECSYPGSISNLLGKHSLLLMKGSLHKRMHSFTMSFANSSIIRDHLLVDVDRLIRLNLESWTGRIFLLEEAKKITFELAVKQLMSFDRCEWTQNLMKEYLLVIEGFFTVPFPLFSPTYRRAIQARRKVAEQLGTVVWERRKEIIEGGGKRKDMLGALLAGEDGLSDEKIVDFLLALLVAGYETTSTTMTLAVKFLTETPLALAQLQEEHVQIKARKKKSDQHLQWNDYKSMPFTQCVVNETLRVANIISGVFRRAMTDVNIKGYTIPKGWRVFASFRAVHLDQDHFKDARSFNPWRWQQQSSSMTVNAFTPFGGGPRLCPGYELARVELSVFLHHLVTQFSWVPAEDDKLVFFPTTRTQKRYPIYVTCKDETRQCKDSNL | 479 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 40614330 | 40622520 | + | Sed0022592.1 | Sed04g2894 | 711497 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g2894 | 479 | PRINTS | E-class P450 group I signature | 64 | 83 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2894 | 479 | PRINTS | E-class P450 group I signature | 267 | 284 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2894 | 479 | PRINTS | E-class P450 group I signature | 418 | 441 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2894 | 479 | PRINTS | E-class P450 group I signature | 408 | 418 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2894 | 479 | PRINTS | E-class P450 group I signature | 334 | 352 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2894 | 479 | PRINTS | E-class P450 group I signature | 287 | 313 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2894 | 479 | PRINTS | E-class P450 group I signature | 374 | 398 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2894 | 479 | FunFam | Cytochrome P450 90A1 | 21 | 468 | - | - | |
| Sed04g2894 | 479 | Gene3D | Cytochrome P450 | 22 | 467 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2894 | 479 | CDD | CYP90-like | 63 | 466 | - | - | |
| Sed04g2894 | 479 | SUPERFAMILY | Cytochrome P450 | 26 | 466 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2894 | 479 | Coils | Coil | 301 | 321 | - | - | |
| Sed04g2894 | 479 | PRINTS | P450 superfamily signature | 418 | 429 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2894 | 479 | PRINTS | P450 superfamily signature | 335 | 346 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2894 | 479 | PRINTS | P450 superfamily signature | 278 | 295 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2894 | 479 | PRINTS | P450 superfamily signature | 409 | 418 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2894 | 479 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 411 | 420 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed04g2894 | 479 | Pfam | Cytochrome P450 | 205 | 449 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2894 | 479 | PANTHER | CYTOCHROME P450 26 | 31 | 443 | - | GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g2894 | Sed-Chr4:40614330 | Sed09g1689 | Sed-Chr9:40232290 | 2.30E-99 | dispersed | |
| Sed08g2815 | Sed-Chr8:39544781 | Sed04g2894 | Sed-Chr4:40614330 | 6.80E-67 | transposed | |
| Sed04g2894 | Sed-Chr4:40614330 | Sed07g2562 | Sed-Chr7:41160663 | 1.10E-237 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g2894 | K09588 | - | csv:101216594 | 819.305 |