Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2894 ATGGCTTTTTTCTTCTTCTTCTTCTTTTCCTCTGTTTTCGCCTCTTTTCTCTTCATCTTCCACCGGCCGGCCATATTCCGGCGAGTGCTGCTGCCGCCGGGAACTCTCGGCCTGCCGTTGATCGGAGAGACCCTCAAGCTCATCTCCGCCTACAAGACCGAGAACCCTGAACCGTTCATCGACGAACGGGTCCGCCGGTTCGGACCGGTATTCACGACCCATTTGTTTGGCGAGCCGACGGTTTTCTCTGCCGATTTTGAGACGAACCGGTTCATTCTTCAGAATGAGGAGAAGCTTTTTGAGTGTAGCTACCCCGGTTCGATTTCGAACCTGCTTGGGAAGCATTCTTTGTTGCTTATGAAAGGGAGTTTGCACAAGAGAATGCACTCTTTCACTATGAGCTTTGCCAATTCCTCCATTATTCGGGATCATCTTTTGGTCGATGTCGACCGGCTCATTCGCCTCAATTTGGAGTCTTGGACCGGCAGGATCTTCCTCTTGGAGGAGGCCAAAAAGATAACTTTTGAGTTAGCCGTGAAGCAATTGATGAGCTTTGATAGATGCGAATGGACTCAAAATCTGATGAAGGAATATCTTCTGGTCATTGAAGGATTTTTTACCGTTCCTTTCCCTCTATTTTCCCCCACTTACCGTCGAGCCATCCAGGCTCGAAGAAAGGTGGCGGAGCAATTGGGGACGGTGGTGTGGGAGAGAAGGAAAGAGATAATCGAGGGCGGAGGGAAGAGGAAAGACATGCTCGGGGCATTGCTCGCCGGGGAGGACGGGCTCTCCGACGAGAAAATAGTAGACTTCTTGCTGGCTCTATTGGTGGCGGGGTATGAAACGACGTCGACCACCATGACACTGGCCGTCAAGTTTCTCACGGAAACGCCGCTGGCTTTAGCCCAATTACAGGAAGAGCATGTGCAAATTAAAGCAAGGAAGAAGAAATCAGACCAACATCTTCAATGGAATGATTACAAGTCCATGCCTTTCACTCAATGTGTTGTGAATGAAACATTAAGAGTTGCCAACATAATCAGTGGGGTTTTTAGGAGAGCAATGACAGACGTAAATATCAAAGGTTATACAATTCCAAAGGGATGGAGGGTTTTTGCATCATTTCGTGCAGTACATTTGGACCAGGATCATTTCAAAGATGCTCGATCTTTTAACCCATGGAGATGGCAACAGCAGAGTAGCTCGATGACGGTCAATGCATTTACACCCTTCGGTGGAGGTCCGAGGCTATGCCCCGGTTATGAGCTTGCCAGAGTAGAACTCTCTGTTTTCCTTCATCATCTTGTCACCCAATTCAGTTGGGTTCCAGCAGAAGATGATAAGTTGGTGTTTTTCCCAACAACAAGAACACAGAAGAGGTATCCTATTTATGTGACATGTAAAGACGAAACTCGACAATGTAAAGACAGTAATCTGTGA 1440 47.64 MAFFFFFFFSSVFASFLFIFHRPAIFRRVLLPPGTLGLPLIGETLKLISAYKTENPEPFIDERVRRFGPVFTTHLFGEPTVFSADFETNRFILQNEEKLFECSYPGSISNLLGKHSLLLMKGSLHKRMHSFTMSFANSSIIRDHLLVDVDRLIRLNLESWTGRIFLLEEAKKITFELAVKQLMSFDRCEWTQNLMKEYLLVIEGFFTVPFPLFSPTYRRAIQARRKVAEQLGTVVWERRKEIIEGGGKRKDMLGALLAGEDGLSDEKIVDFLLALLVAGYETTSTTMTLAVKFLTETPLALAQLQEEHVQIKARKKKSDQHLQWNDYKSMPFTQCVVNETLRVANIISGVFRRAMTDVNIKGYTIPKGWRVFASFRAVHLDQDHFKDARSFNPWRWQQQSSSMTVNAFTPFGGGPRLCPGYELARVELSVFLHHLVTQFSWVPAEDDKLVFFPTTRTQKRYPIYVTCKDETRQCKDSNL 479
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 40614330 40622520 + Sed0022592.1 Sed04g2894 711497
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2894 479 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2894 479 PRINTS E-class P450 group I signature 267 284 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2894 479 PRINTS E-class P450 group I signature 418 441 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2894 479 PRINTS E-class P450 group I signature 408 418 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2894 479 PRINTS E-class P450 group I signature 334 352 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2894 479 PRINTS E-class P450 group I signature 287 313 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2894 479 PRINTS E-class P450 group I signature 374 398 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2894 479 FunFam Cytochrome P450 90A1 21 468 - -
Sed04g2894 479 Gene3D Cytochrome P450 22 467 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2894 479 CDD CYP90-like 63 466 - -
Sed04g2894 479 SUPERFAMILY Cytochrome P450 26 466 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2894 479 Coils Coil 301 321 - -
Sed04g2894 479 PRINTS P450 superfamily signature 418 429 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2894 479 PRINTS P450 superfamily signature 335 346 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2894 479 PRINTS P450 superfamily signature 278 295 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2894 479 PRINTS P450 superfamily signature 409 418 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2894 479 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 411 420 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed04g2894 479 Pfam Cytochrome P450 205 449 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2894 479 PANTHER CYTOCHROME P450 26 31 443 - GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2894 Sed-Chr4:40614330 Sed09g1689 Sed-Chr9:40232290 2.30E-99 dispersed
Sed08g2815 Sed-Chr8:39544781 Sed04g2894 Sed-Chr4:40614330 6.80E-67 transposed
Sed04g2894 Sed-Chr4:40614330 Sed07g2562 Sed-Chr7:41160663 1.10E-237 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2894 K09588 - csv:101216594 819.305