Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2900 ATGACGAAATTACCCTCTCCCTCCGCCGCCGTTCTCCTTTTCCTCGCCGTCGTTTTCACCCTTTTTCCGGCGACTCCAGCCCTCGGCTCTGCCTCCACGCTCGCCGTCAGCTACGCCTCCGCCACCGTCTGCGGCATCGTCGCTGAGCAGTCTACTCAAAGAATTTTGTGCTTCCGCAACGGTCAGATCCTTTTTATCGAGCCGAATATCTCCTTCTCTGCCGTCTCCGGCGGCCGGAATACCTTCTGCGGCATCAGGGCCGGCGGCTACGCCCTTCTCTGCTGGGATTTTGACATAAACACTGCTGTGTTTACGCGGAGAAGACTTTACTTCAACACCGACGTTCTTCTTGACAATCTCGCCGTCGGCGACGACCAAATCTGCGCCACGGCGGTCGGCGCCGGCAATGTAACTTGCTGGCGAGGAGGTAACAATGCGACTGTTGGGTTTTCTCTACTTCAATTTGATTCGATTTCTTCTGGGTTTGGATTTTCTTGTGGGATTTTAAAGGGGAATCGATCTGTTCGATGTTGGGGTCGGGATTTATCGATTTCGGGTATAATTGAAAATGGGTTTCGAAATATTTCAATGTCGACCATCGTTGCCGGTGGGTTTCATGCTTGTGGGTTTAATTTCTCTGGCGGGTTGGTTTGTAGAGGGAAGAACGATTTTGGGCAGTTGGATTTTCCTTCGAATTTATCCATGGCGTTCTCTGAATTGACCCTTGGCGAACGCCATAGCTGTGGGATTTTGATCTTGAATGGATCGGTGATTTGCTGGGGAAGTTTGGGTTTCTCTGTCGATTCGATTCGAGAAACTTCTTTTGAGTTAATTTCTTCAGGATCAGATTTCGTTTGTGGATTAACGACTAGTAATCTCTCTGTTCTATGTTGGGGGCCTGGTTGGTTGAATGATTCTTTTGGTCTTTTTTCACTTTCTCTTCCTAAGATTCTTCCTGGTCCTTGTGTTCAATCTTCTTGTAGCGATTGTGGGATTTATCCTCTGTCTCAAACGCTCTGTTCTGGTTTTGGAAATGTCTGTAATCGCTGTCCGGTTACTGTTTCAACGCCGCCGTCGCCTCCCCCGTCTCCACCGCCGATGGTGGCGACCCCACCACCGCCTCCGGCGGCATTGAAAAAGGGTTTGCTGGCTTTTGCTATTGTGGGCTCAGTTGGGGCCTTTGCTGGGATCTGTACTGTTGTTTACTGTTTGTGGACTGGTGTTTGTTTTGGGCATAAGAAGATACATAACTCTGTTCAGCCTACCATTACTCGAGCTGCTAGCTCGGGTGGGACGACCTCGAACACGAACAACAGCCCGCCGTCTCGGTCGTTGACGATTCGGCGACAGGGGTCTAGGATAATGCGGAGGCAGAGGAGTGGTACATCGTCGAAGCATGCGGATAGAGCAGAGGAATTCACTCTTACTGAGCTTGCTTTGGCTACCAATGACTTTTCTCAAGAGAACAAGATCGGGCAAGGGAGCTTTGGCGTTGTGTACCGAGGGAAACTGTCCGATGGGCGGGAAGTTGCAATCAAGAGAGGCGAAACAGGGTCGAAGACGAAGAAGTATCAGGAGAAGGAGAGTGCTTTCGATTCGGAATTGACATTCTTGTCAAGGCTTCATCACAAGCATTTGGTGAGGCTTGTTGGGTATTGTGAGGAGAAAGATGAGAGGCTTTTGGTTTATGAGTATATGAAAAATGGTGCACTTCACTATCATCTTCATGACAAGAACAATTCTGAGAAAGCTAGCAGTGTTGTAAATTCTTGGAAAATGAGGATCAAAATTGCTTTAGATGCAGCTAGAGGAATTGAATATCTTCACAACTATGCTGTTCCTCCCATAATCCATAGGGATATCAAATCATCCAACATTCTCCTTGATTTGAATTGGACTGCAAGAGTATCAGATTTCGGGTTGTCGTTGATGAGTCCAGGGTCAGACCGTGATTACCAACCGACGAAGGCAGCTGGGACAGTTGGTTACATTGATCCCGAGTACTATGGATTGAATGTTTTGACTGCTAAGAGTGATGTGTATGGTCTTGGTGTGGTGTTGTTGGAACTTTTGACAGGGAAGAGAGCTATATTCAAGGATGGCGAACAGGGAGGTACACCGGTGAGCGTGGTTGATTTTGCGGTACCTTCGATTATGGTCGGAGAGCTAGGGAAGATTTTGGATCCAAGAGTTGGGCTGCCACAGTTCAACGAAGCAGAAGCTGTGGAACTGGTGGCTTACACCGCGATGCACTGTGTGCATTTGGAAGGGAAAGATCGACCGACAATGACCGACATTGTCGCGAATTTGGAGCGAGCTTTGAATCTCTGTGATGATAGCCATGGCAGCATCTCTAGTGGTGGAATTTCCATTGTTTCAGAGTGA 2385 48.39 MTKLPSPSAAVLLFLAVVFTLFPATPALGSASTLAVSYASATVCGIVAEQSTQRILCFRNGQILFIEPNISFSAVSGGRNTFCGIRAGGYALLCWDFDINTAVFTRRRLYFNTDVLLDNLAVGDDQICATAVGAGNVTCWRGGNNATVGFSLLQFDSISSGFGFSCGILKGNRSVRCWGRDLSISGIIENGFRNISMSTIVAGGFHACGFNFSGGLVCRGKNDFGQLDFPSNLSMAFSELTLGERHSCGILILNGSVICWGSLGFSVDSIRETSFELISSGSDFVCGLTTSNLSVLCWGPGWLNDSFGLFSLSLPKILPGPCVQSSCSDCGIYPLSQTLCSGFGNVCNRCPVTVSTPPSPPPSPPPMVATPPPPPAALKKGLLAFAIVGSVGAFAGICTVVYCLWTGVCFGHKKIHNSVQPTITRAASSGGTTSNTNNSPPSRSLTIRRQGSRIMRRQRSGTSSKHADRAEEFTLTELALATNDFSQENKIGQGSFGVVYRGKLSDGREVAIKRGETGSKTKKYQEKESAFDSELTFLSRLHHKHLVRLVGYCEEKDERLLVYEYMKNGALHYHLHDKNNSEKASSVVNSWKMRIKIALDAARGIEYLHNYAVPPIIHRDIKSSNILLDLNWTARVSDFGLSLMSPGSDRDYQPTKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKDGEQGGTPVSVVDFAVPSIMVGELGKILDPRVGLPQFNEAEAVELVAYTAMHCVHLEGKDRPTMTDIVANLERALNLCDDSHGSISSGGISIVSE 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 40671278 40674173 - Sed0022189.1 Sed04g2900 711503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2900 794 SUPERFAMILY RCC1/BLIP-II 68 302 IPR009091 -
Sed04g2900 794 SMART serkin_6 485 774 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2900 794 MobiDBLite consensus disorder prediction 426 468 - -
Sed04g2900 794 ProSiteProfiles Protein kinase domain profile. 485 774 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2900 794 Pfam Protein kinase domain 486 767 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2900 794 FunFam serine/threonine-protein kinase-like protein CCR1 454 565 - -
Sed04g2900 794 SUPERFAMILY Protein kinase-like (PK-like) 466 770 IPR011009 -
Sed04g2900 794 MobiDBLite consensus disorder prediction 426 449 - -
Sed04g2900 794 Gene3D Phosphorylase Kinase; domain 1 447 565 - -
Sed04g2900 794 Gene3D - 66 308 IPR009091 -
Sed04g2900 794 Gene3D Transferase(Phosphotransferase) domain 1 566 783 - -
Sed04g2900 794 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 31 784 IPR044815 GO:0004674(InterPro)
Sed04g2900 794 ProSitePatterns Protein kinases ATP-binding region signature. 491 513 IPR017441 GO:0005524(InterPro)
Sed04g2900 794 FunFam Serine/threonine-protein kinase-like protein CCR4 566 786 - -
Sed04g2900 794 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2900 Sed-Chr4:40671278 Sed10g1695 Sed-Chr10:33824359 4.10E-109 dispersed
Sed13g1649 Sed-Chr13:21594091 Sed04g2900 Sed-Chr4:40671278 1.80E-23 dispersed
Sed13g1650 Sed-Chr13:21594091 Sed04g2900 Sed-Chr4:40671278 1.80E-23 dispersed
Sed04g2900 Sed-Chr4:40671278 Sed09g1544 Sed-Chr9:38981033 1.30E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79059 PF00069 Pkinase 8.30E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2900 - - - 0.0