Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2905 ATGGCTTCAATTTCTTCCAGCCCTCGAACCGTCGAAGACATCTTCAAGGATTACAGCGCTCGTCGCAATGGCCTTGTCCGAGCCCTCACTTACGATGTCGAAGAGTTCTTCGCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTTTGGACACCCCAATGAGTCTTGGGAGGTGGCTTTGCCTGCTGAGGAAGTTCCATCCGAGCTTCCTGAGCCTGCTTTGGGTATCAATTTTGCAAGAGATGGGATGAGGCGCAAGGACTGGATTTCGTTGGTGGCTGTGCACAGTGATTGCTGGTTGCTTTCCGTGGCGTTTTACTTCGGTGCTCGACTCAACCGCAATGAGCGGAAGAGACTATTTAGCATAATAAATGATCTACCCACTCTATTTGAGGTTGCATCTGGAAGGAAAGCTATTAAAGACAAACCCAGTATGGACAGTGGAAGGGACAGTGGAAGGGACAGTGGAAGTAAATCCAAAAACAGCACACAGAGGACGCCAGAAGGGTCGATTAGAAACAGCAATCCAAAGCTACTCGATGGGAGTTACGGAGAGGAGGAAGACGAGCACGGCGATACTCTCTGTGGGAGCTGTGGAGGGAACTACAACCCAGATGAGTTTTGGATTGGTTGTGACATCTGTGAGAGGTGGTTCCATGGAAAATGTGTTCGGATAACGCCAACGAAGGCAGAAAGTATCAAGCAGTACAAATGCCCCTCTTGCAGCACGAAGAGAGGAAGACCATAG 750 49.33 MASISSSPRTVEDIFKDYSARRNGLVRALTYDVEEFFALCDPEKENLCLFGHPNESWEVALPAEEVPSELPEPALGINFARDGMRRKDWISLVAVHSDCWLLSVAFYFGARLNRNERKRLFSIINDLPTLFEVASGRKAIKDKPSMDSGRDSGRDSGSKSKNSTQRTPEGSIRNSNPKLLDGSYGEEEDEHGDTLCGSCGGNYNPDEFWIGCDICERWFHGKCVRITPTKAESIKQYKCPSCSTKRGRP 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 40711465 40722092 + Sed0002869.1 Sed04g2905 711508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2905 249 MobiDBLite consensus disorder prediction 158 178 - -
Sed04g2905 249 Pfam PHD-finger 196 242 IPR019787 -
Sed04g2905 249 PANTHER CPG BINDING PROTEIN 7 248 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Sed04g2905 249 CDD PHD_AL_plant 195 245 IPR044104 -
Sed04g2905 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 244 IPR013083 -
Sed04g2905 249 MobiDBLite consensus disorder prediction 141 187 - -
Sed04g2905 249 MobiDBLite consensus disorder prediction 141 157 - -
Sed04g2905 249 FunFam PHD finger alfin-like protein 188 244 - -
Sed04g2905 249 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Sed04g2905 249 SMART PHD_3 195 243 IPR001965 -
Sed04g2905 249 SUPERFAMILY FYVE/PHD zinc finger 184 247 IPR011011 -
Sed04g2905 249 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Sed04g2905 249 Pfam Alfin 10 134 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2905 K26274 - - csv:101211934 453.751
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2905 Sed-Chr4:40711465 Sed07g2570 Sed-Chr7:41225394 4.90E-125 dispersed
Sed04g2905 Sed-Chr4:40711465 Sed07g2569 Sed-Chr7:41225394 1.20E-126 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g1860 . 1 252 Alfin-like Transcription Factor Family AT1G14510 81.7 1.5e-110 396.7
Sed07g1863 . 1 252 Alfin-like Transcription Factor Family AT1G14510 81.7 1.5e-110 396.7
Sed07g1861 . 1 253 Alfin-like Transcription Factor Family AT1G14510 81.4 2.2e-109 392.9
Sed07g1864 . 1 253 Alfin-like Transcription Factor Family AT1G14510 81.4 2.2e-109 392.9
Sed13g1088 . 1 238 Alfin-like Transcription Factor Family AT1G14510 72.3 8.5e-101 364.4
Sed03g1808 . 9 248 Alfin-like Transcription Factor Family AT1G14510 68.4 1.1e-92 337.4
Sed09g1666 . 10 249 Alfin-like Transcription Factor Family AT1G14510 66.8 4.2e-92 335.5
Sed11g0863 . 1 256 Alfin-like Transcription Factor Family AT1G14510 73.0 8.0e-91 331.3
Sed08g1790 . 1 236 Alfin-like Transcription Factor Family AT1G14510 70.6 1.0e-90 330.9
Sed04g0789 . 11 260 Alfin-like Transcription Factor Family AT1G14510 68.5 2.2e-88 323.2
Sed08g1789 . 1 256 Alfin-like Transcription Factor Family AT1G14510 68.8 1.8e-87 320.1
Sed07g2570 . 8 245 Alfin-like Transcription Factor Family AT1G14510 60.2 1.6e-78 290.4
Sed07g2569 . 8 238 Alfin-like Transcription Factor Family AT1G14510 60.2 2.7e-78 289.7
Sed04g2905 . 8 246 Alfin-like Transcription Factor Family AT1G14510 56.8 4.0e-74 275.8
Sed08g1791 . 37 249 Alfin-like Transcription Factor Family AT1G14510 68.5 1.5e-68 257.3
Sed03g1808 . 1 250 Alfin-like Transcription Factor Family AT5G26210 74.4 3.9e-109 392.1
Sed11g0863 . 1 258 Alfin-like Transcription Factor Family AT5G26210 80.6 1.2e-102 370.5
Sed08g1789 . 1 259 Alfin-like Transcription Factor Family AT5G26210 79.2 4.6e-102 368.6
Sed08g1790 . 1 239 Alfin-like Transcription Factor Family AT5G26210 75.3 2.3e-101 366.3
Sed09g1666 . 1 252 Alfin-like Transcription Factor Family AT5G26210 64.5 8.3e-96 347.8
Sed04g0789 . 5 262 Alfin-like Transcription Factor Family AT5G26210 69.0 5.1e-93 338.6
Sed07g1860 . 9 254 Alfin-like Transcription Factor Family AT5G26210 71.5 1.2e-91 334.0
Sed07g1863 . 9 254 Alfin-like Transcription Factor Family AT5G26210 71.5 1.2e-91 334.0
Sed07g1861 . 9 255 Alfin-like Transcription Factor Family AT5G26210 72.6 2.8e-91 332.8
Sed07g1864 . 9 255 Alfin-like Transcription Factor Family AT5G26210 72.6 2.8e-91 332.8
Sed13g1088 . 1 240 Alfin-like Transcription Factor Family AT5G26210 63.4 1.9e-87 320.1
Sed08g1791 . 37 252 Alfin-like Transcription Factor Family AT5G26210 80.1 7.6e-81 298.1
Sed07g2570 . 7 247 Alfin-like Transcription Factor Family AT5G26210 57.2 2.2e-80 296.6
Sed07g2569 . 7 240 Alfin-like Transcription Factor Family AT5G26210 58.3 2.9e-80 296.2
Sed04g2905 . 7 248 Alfin-like Transcription Factor Family AT5G26210 60.7 2.7e-78 289.7
Sed03g1808 . 1 250 Alfin-like Transcription Factor Family AT3G42790 69.7 1.4e-100 363.6
Sed08g1790 . 3 239 Alfin-like Transcription Factor Family AT3G42790 77.5 2.5e-100 362.8
Sed11g0863 . 1 258 Alfin-like Transcription Factor Family AT3G42790 76.4 1.0e-98 357.5
Sed08g1789 . 3 259 Alfin-like Transcription Factor Family AT3G42790 78.6 3.0e-98 355.9
Sed09g1666 . 1 252 Alfin-like Transcription Factor Family AT3G42790 62.5 5.0e-93 338.6
Sed04g0789 . 4 262 Alfin-like Transcription Factor Family AT3G42790 67.3 2.1e-91 333.2
Sed07g1861 . 9 255 Alfin-like Transcription Factor Family AT3G42790 70.6 4.3e-89 325.5
Sed07g1864 . 9 255 Alfin-like Transcription Factor Family AT3G42790 70.6 4.3e-89 325.5
Sed07g1860 . 9 254 Alfin-like Transcription Factor Family AT3G42790 70.9 9.7e-89 324.3
Sed07g1863 . 9 254 Alfin-like Transcription Factor Family AT3G42790 70.9 9.7e-89 324.3
Sed13g1088 . 8 240 Alfin-like Transcription Factor Family AT3G42790 61.4 4.7e-83 305.4
Sed07g2569 . 7 240 Alfin-like Transcription Factor Family AT3G42790 59.8 1.3e-80 297.4
Sed07g2570 . 7 247 Alfin-like Transcription Factor Family AT3G42790 59.2 6.3e-80 295.0
Sed04g2905 . 7 248 Alfin-like Transcription Factor Family AT3G42790 62.2 2.0e-78 290.0
Sed08g1791 . 37 252 Alfin-like Transcription Factor Family AT3G42790 77.3 4.2e-76 282.3
Sed07g2569 . 1 240 Alfin-like Transcription Factor Family AT5G05610 78.4 2.1e-112 402.9
Sed07g2570 . 1 247 Alfin-like Transcription Factor Family AT5G05610 76.2 2.5e-110 396.0
Sed04g2905 . 1 248 Alfin-like Transcription Factor Family AT5G05610 72.7 4.2e-105 378.6
Sed03g1808 . 8 250 Alfin-like Transcription Factor Family AT5G05610 64.3 2.2e-90 329.7
Sed09g1666 . 10 252 Alfin-like Transcription Factor Family AT5G05610 65.6 1.0e-87 320.9
Sed08g1790 . 8 238 Alfin-like Transcription Factor Family AT5G05610 61.4 1.8e-84 310.1
Sed04g0789 . 11 262 Alfin-like Transcription Factor Family AT5G05610 60.7 9.0e-84 307.8
Sed11g0863 . 5 258 Alfin-like Transcription Factor Family AT5G05610 59.8 9.0e-84 307.8
Sed07g1860 . 9 254 Alfin-like Transcription Factor Family AT5G05610 62.2 1.2e-83 307.4
Sed07g1863 . 9 254 Alfin-like Transcription Factor Family AT5G05610 62.2 1.2e-83 307.4
Sed07g1861 . 9 255 Alfin-like Transcription Factor Family AT5G05610 61.9 1.5e-83 307.0
Sed07g1864 . 9 255 Alfin-like Transcription Factor Family AT5G05610 61.9 1.5e-83 307.0
Sed13g1088 . 8 240 Alfin-like Transcription Factor Family AT5G05610 63.0 5.9e-83 305.1
Sed08g1789 . 8 258 Alfin-like Transcription Factor Family AT5G05610 59.1 1.7e-82 303.5
Sed08g1791 . 37 251 Alfin-like Transcription Factor Family AT5G05610 58.3 3.8e-66 249.2
Sed07g2569 . 43 240 Alfin-like Transcription Factor Family AT3G11200 81.6 5.8e-96 348.2
Sed07g2570 . 43 247 Alfin-like Transcription Factor Family AT3G11200 78.8 7.1e-94 341.3
Sed04g2905 . 43 248 Alfin-like Transcription Factor Family AT3G11200 73.2 1.3e-87 320.5
Sed03g1808 . 44 250 Alfin-like Transcription Factor Family AT3G11200 63.3 1.8e-73 273.5
Sed09g1666 . 44 252 Alfin-like Transcription Factor Family AT3G11200 62.2 9.1e-73 271.2
Sed08g1790 . 44 238 Alfin-like Transcription Factor Family AT3G11200 62.1 2.7e-69 259.6
Sed07g1860 . 44 254 Alfin-like Transcription Factor Family AT3G11200 63.5 6.1e-69 258.5
Sed07g1863 . 44 254 Alfin-like Transcription Factor Family AT3G11200 63.5 6.1e-69 258.5
Sed07g1861 . 44 255 Alfin-like Transcription Factor Family AT3G11200 63.2 7.9e-69 258.1
Sed07g1864 . 44 255 Alfin-like Transcription Factor Family AT3G11200 63.2 7.9e-69 258.1
Sed04g0789 . 37 255 Alfin-like Transcription Factor Family AT3G11200 61.2 1.8e-68 256.9
Sed11g0863 . 45 258 Alfin-like Transcription Factor Family AT3G11200 61.2 1.8e-68 256.9
Sed13g1088 . 44 240 Alfin-like Transcription Factor Family AT3G11200 63.4 1.1e-67 254.2
Sed08g1789 . 44 258 Alfin-like Transcription Factor Family AT3G11200 59.1 2.2e-66 250.0
Sed08g1791 . 37 251 Alfin-like Transcription Factor Family AT3G11200 59.1 2.2e-66 250.0
Sed07g1860 . 1 161 Alfin-like Transcription Factor Family AT2G02470 83.9 1.3e-75 280.8
Sed07g1861 . 1 161 Alfin-like Transcription Factor Family AT2G02470 83.9 1.3e-75 280.8
Sed07g1863 . 1 161 Alfin-like Transcription Factor Family AT2G02470 83.9 1.3e-75 280.8
Sed07g1864 . 1 161 Alfin-like Transcription Factor Family AT2G02470 83.9 1.3e-75 280.8
Sed13g1088 . 1 158 Alfin-like Transcription Factor Family AT2G02470 79.5 1.1e-68 257.7
Sed03g1808 . 1 158 Alfin-like Transcription Factor Family AT2G02470 75.9 1.3e-64 244.2
Sed08g1789 . 1 149 Alfin-like Transcription Factor Family AT2G02470 79.2 8.4e-64 241.5
Sed08g1790 . 1 145 Alfin-like Transcription Factor Family AT2G02470 78.6 1.1e-63 241.1
Sed11g0863 . 1 150 Alfin-like Transcription Factor Family AT2G02470 78.7 2.1e-62 236.9
Sed04g0789 . 11 163 Alfin-like Transcription Factor Family AT2G02470 74.5 3.5e-62 236.1
Sed09g1666 . 10 160 Alfin-like Transcription Factor Family AT2G02470 74.2 6.7e-61 231.9
Sed07g2570 . 8 161 Alfin-like Transcription Factor Family AT2G02470 68.2 4.2e-55 212.6
Sed07g2569 . 8 155 Alfin-like Transcription Factor Family AT2G02470 70.2 7.1e-55 211.8
Sed04g2905 . 8 136 Alfin-like Transcription Factor Family AT2G02470 72.5 4.3e-52 202.6
Sed08g1791 . 37 142 Alfin-like Transcription Factor Family AT2G02470 84.0 6.1e-46 182.2
Sed03g1808 . 1 164 Alfin-like Transcription Factor Family AT5G20510 77.0 8.2e-72 267.7
Sed11g0863 . 1 154 Alfin-like Transcription Factor Family AT5G20510 79.9 9.0e-71 264.2
Sed08g1789 . 3 150 Alfin-like Transcription Factor Family AT5G20510 81.1 7.7e-70 261.2
Sed08g1790 . 3 149 Alfin-like Transcription Factor Family AT5G20510 81.0 2.9e-69 259.2
Sed04g0789 . 1 161 Alfin-like Transcription Factor Family AT5G20510 75.8 8.5e-69 257.7
Sed07g1860 . 3 172 Alfin-like Transcription Factor Family AT5G20510 70.3 1.5e-65 246.9
Sed07g1863 . 3 172 Alfin-like Transcription Factor Family AT5G20510 70.3 1.5e-65 246.9
Sed07g1861 . 3 173 Alfin-like Transcription Factor Family AT5G20510 71.1 2.5e-65 246.1
Sed07g1864 . 3 173 Alfin-like Transcription Factor Family AT5G20510 71.1 2.5e-65 246.1
Sed09g1666 . 1 162 Alfin-like Transcription Factor Family AT5G20510 72.1 4.3e-65 245.4
Sed13g1088 . 3 160 Alfin-like Transcription Factor Family AT5G20510 67.5 1.0e-58 224.2
Sed07g2570 . 7 163 Alfin-like Transcription Factor Family AT5G20510 63.8 9.1e-55 211.1
Sed07g2569 . 7 157 Alfin-like Transcription Factor Family AT5G20510 65.0 7.7e-54 208.0
Sed04g2905 . 7 145 Alfin-like Transcription Factor Family AT5G20510 66.4 1.2e-51 200.7
Sed08g1791 . 37 143 Alfin-like Transcription Factor Family AT5G20510 81.3 3.7e-48 189.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38299 PF12165 Alfin 7.50E-66 No_clan Sed TF