Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2905 ATGGCTTCAATTTCTTCCAGCCCTCGAACCGTCGAAGACATCTTCAAGGATTACAGCGCTCGTCGCAATGGCCTTGTCCGAGCCCTCACTTACGATGTCGAAGAGTTCTTCGCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTTTGGACACCCCAATGAGTCTTGGGAGGTGGCTTTGCCTGCTGAGGAAGTTCCATCCGAGCTTCCTGAGCCTGCTTTGGGTATCAATTTTGCAAGAGATGGGATGAGGCGCAAGGACTGGATTTCGTTGGTGGCTGTGCACAGTGATTGCTGGTTGCTTTCCGTGGCGTTTTACTTCGGTGCTCGACTCAACCGCAATGAGCGGAAGAGACTATTTAGCATAATAAATGATCTACCCACTCTATTTGAGGTTGCATCTGGAAGGAAAGCTATTAAAGACAAACCCAGTATGGACAGTGGAAGGGACAGTGGAAGGGACAGTGGAAGTAAATCCAAAAACAGCACACAGAGGACGCCAGAAGGGTCGATTAGAAACAGCAATCCAAAGCTACTCGATGGGAGTTACGGAGAGGAGGAAGACGAGCACGGCGATACTCTCTGTGGGAGCTGTGGAGGGAACTACAACCCAGATGAGTTTTGGATTGGTTGTGACATCTGTGAGAGGTGGTTCCATGGAAAATGTGTTCGGATAACGCCAACGAAGGCAGAAAGTATCAAGCAGTACAAATGCCCCTCTTGCAGCACGAAGAGAGGAAGACCATAG 750 49.33 MASISSSPRTVEDIFKDYSARRNGLVRALTYDVEEFFALCDPEKENLCLFGHPNESWEVALPAEEVPSELPEPALGINFARDGMRRKDWISLVAVHSDCWLLSVAFYFGARLNRNERKRLFSIINDLPTLFEVASGRKAIKDKPSMDSGRDSGRDSGSKSKNSTQRTPEGSIRNSNPKLLDGSYGEEEDEHGDTLCGSCGGNYNPDEFWIGCDICERWFHGKCVRITPTKAESIKQYKCPSCSTKRGRP 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 40711465 40722092 + Sed0002869.1 Sed04g2905 711508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2905 249 MobiDBLite consensus disorder prediction 158 178 - -
Sed04g2905 249 Pfam PHD-finger 196 242 IPR019787 -
Sed04g2905 249 PANTHER CPG BINDING PROTEIN 7 248 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Sed04g2905 249 CDD PHD_AL_plant 195 245 IPR044104 -
Sed04g2905 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 244 IPR013083 -
Sed04g2905 249 MobiDBLite consensus disorder prediction 141 187 - -
Sed04g2905 249 MobiDBLite consensus disorder prediction 141 157 - -
Sed04g2905 249 FunFam PHD finger alfin-like protein 188 244 - -
Sed04g2905 249 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Sed04g2905 249 SMART PHD_3 195 243 IPR001965 -
Sed04g2905 249 SUPERFAMILY FYVE/PHD zinc finger 184 247 IPR011011 -
Sed04g2905 249 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Sed04g2905 249 Pfam Alfin 10 134 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2905 Sed-Chr4:40711465 Sed07g2570 Sed-Chr7:41225394 4.90E-125 dispersed
Sed04g2905 Sed-Chr4:40711465 Sed07g2569 Sed-Chr7:41225394 1.20E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38299 PF12165 Alfin 7.50E-66 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2905 K26274 - csv:101211934 453.751