Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2907 ATGTGTAGTGGATCAAAAAATAAAGTTGCTTCCTCGAATTCTGCCATGGAAGCCAAGTTTCAGAAGCTTAACGATGGGGGATTTTTCTCTGCGAGTTCAATTTTGCTTGAATTGTCGGCTTCTGATGATGTAGAAGGGTTCAAGAGAGAGGTTGAAGAAAAGGGTTTGGATGTTGACGAAGCAAGCTGCTGGTATGGAAGAGGAATTGGATCAAAGAAGATGAGTTTTGAAAAAAGAACTCCTCTCATGATTGCTGCCATGTTTGGAAGCTCCAAGGTTGTCAAGCACTTGATTGAGTCAGGCAAGGTTGATGTCAACAGGGCTTGTGGTTCAGATATGGCCACTGCCCTTCACTGTGCCACTGCTGGTGGCTCTGGTTCTTCCCTTGAGACAATCAAGCTATTGCTCAATGGATCTGCCGATGTTGATTGTGTCGATGCTAATGGGAGAAAGCCTGTTGATTTGATTGTTTCAGCTTGCAGGATGGTGTGTAACTCAGGAAGAAAGGCTATGGAGATGTTGCTGAGAGGAGATGGTATTGCTCGGGAAGGCGAATTGAGCTTTTACCTTGAAGAAGACCAACAGAAGATCATAGCTTCGCAATTTGCGAAAGATGGAAGTGAAAAGAAAGAGTATCCTGTTGATGTATCACTACCTGATATCAATACTGGGATATACAGTACTGATGATTTTAGGATGTATACCTTTAAAGTGAAGCCTTGTTCGAGGGCATATTCGCACGATTGGACCGAGTGTCCGTTTGTTCATCCCGGTGAGAATGCTAGGCGTAGAGACCCCATGAAGTACCCCTATAGTTGTGTCCCTTGCCCTGAATTCCGCAAGGGGACTTGCTCTAAGGGAGATTCATGTGAGTATGCTCATGGTGTCTTCGAGTCCTGGCTCCACCCTGCTCAATACCGAACCCGGCTCTGCAAGGATGAGACTGGCTGCGCAAGGAAGGTCTGTTTCTTTGCTCACAAACATGAAGAGTTGCGCCCTGTGTATGCTTCAACAGGCTCAGGCATGCCTTCACCCAGGTCTCTTTCAAACAGTGCAGGGGATATGTCTACCATGAGCCCACTGGCTCTTGGTTCATCGTCGTTGCCGTTACCGACTACTTCGACACCTCCCATGTCTCCTTCAGCATCAGTATCTTCTCCTAGGAATGGAAACTTGTGGCAGAACAAGATTAATCTTACCCCTCCGGCTTTGCAGTTCCCTGGTAGTCGGTTAAAGACCACCTTGAGTGCAAGAGATTTGGATTTAGAGATGGAATTGCTCGGGTTGGCAAAGAACGCGAGTCAGTTTCGTCATCAACAGCAGTTGATCGATGAGATGTCCCGACTCTCCTCTCCATCTTACCGGAGTGCAGAGTTGAAGCCATCAAACCTCGATGACATGTTTGGATCATTAGATTCTTCCTTGTTATCACAGTTGCAGGGTGCCTCGCTGCAAACGCCAATCTCAGCTCAGGTTCAATCTCCGACCGGGCTGCAGATGCGCCAAAACATGAACCAACTCCGAGCAAACCTATCATCCTCACCTGTAAAGAAACCCGCCTCTTTTGGCTTTGATTCATCAAGTGCAGTGGCAGCTGCTGTTATGAACTCGAGGTCTGCTGCCTTTGCAAAACGAAGCCAGAGTTTCATCGATCGAGCTGCAGTGCCCCGTCTTCCCGGGTTTACCACAGCTGCAAACTCTGCAGCTACAATGTCTTCCCATCTGTCAGATTGGAACTCGCCTGATGGTAAACTAGACTGGGGAATGCAGGGCAATGATCTCAACAAACTCAAGAAATCTGCTTCATTTGGAATCCGAAACAACAGCATGGGAGCTCCTTCCTTCACACCATCAGCAGGGGAGCCCGATGTCTCTTGGGTTAACTCCTTGGTTAAAGATGTTCCCTCCGAACATTTCGAGATGCTCGGTGCTGAGAAGCGGCAATACAACCTCAAACGAGAAATCAACGAGATGCTCCCATCCTGGATGGAGCAGCAGTTGTATGCAGAGCAGGAGCAGACAGTGGCATAA 2031 47.81 MCSGSKNKVASSNSAMEAKFQKLNDGGFFSASSILLELSASDDVEGFKREVEEKGLDVDEASCWYGRGIGSKKMSFEKRTPLMIAAMFGSSKVVKHLIESGKVDVNRACGSDMATALHCATAGGSGSSLETIKLLLNGSADVDCVDANGRKPVDLIVSACRMVCNSGRKAMEMLLRGDGIAREGELSFYLEEDQQKIIASQFAKDGSEKKEYPVDVSLPDINTGIYSTDDFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPMKYPYSCVPCPEFRKGTCSKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCARKVCFFAHKHEELRPVYASTGSGMPSPRSLSNSAGDMSTMSPLALGSSSLPLPTTSTPPMSPSASVSSPRNGNLWQNKINLTPPALQFPGSRLKTTLSARDLDLEMELLGLAKNASQFRHQQQLIDEMSRLSSPSYRSAELKPSNLDDMFGSLDSSLLSQLQGASLQTPISAQVQSPTGLQMRQNMNQLRANLSSSPVKKPASFGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRAAVPRLPGFTTAANSAATMSSHLSDWNSPDGKLDWGMQGNDLNKLKKSASFGIRNNSMGAPSFTPSAGEPDVSWVNSLVKDVPSEHFEMLGAEKRQYNLKREINEMLPSWMEQQLYAEQEQTVA 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 40752391 40756264 + Sed0019650.1 Sed04g2907 711510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2907 676 PANTHER UNKEMPT FAMILY MEMBER 71 634 IPR045234 -
Sed04g2907 676 Pfam Ankyrin repeats (3 copies) 77 144 IPR002110 GO:0005515(InterPro)
Sed04g2907 676 Gene3D - 31 174 IPR036770 -
Sed04g2907 676 ProSiteProfiles Ankyrin repeat profile. 77 101 IPR002110 GO:0005515(InterPro)
Sed04g2907 676 ProSiteProfiles Ankyrin repeat profile. 112 147 IPR002110 GO:0005515(InterPro)
Sed04g2907 676 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872(InterPro)
Sed04g2907 676 SMART c3hfinal6 305 328 IPR000571 GO:0046872(InterPro)
Sed04g2907 676 SMART c3hfinal6 270 296 IPR000571 GO:0046872(InterPro)
Sed04g2907 676 MobiDBLite consensus disorder prediction 340 389 - -
Sed04g2907 676 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Sed04g2907 676 SUPERFAMILY Ankyrin repeat 49 154 IPR036770 -
Sed04g2907 676 Gene3D - 271 333 - -
Sed04g2907 676 ProSiteProfiles Ankyrin repeat region circular profile. 77 101 - -
Sed04g2907 676 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 295 IPR000571 GO:0046872(InterPro)
Sed04g2907 676 MobiDBLite consensus disorder prediction 335 389 - -
Sed04g2907 676 SMART ANK_2a 77 107 IPR002110 GO:0005515(InterPro)
Sed04g2907 676 SMART ANK_2a 112 144 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2907 Sed-Chr4:40752391 Sed05g3774 Sed-Chr5:45496311 1.90E-200 dispersed
Sed04g2907 Sed-Chr4:40752391 Sed07g2572 Sed-Chr7:41300520 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38300 PF12796 Ank_2 7.60E-08 CL0465 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2907 - - - 0.0