Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2935 ATGGATCTAATCCAAACCCCATCTCATTCCAACTCTTGTTGGAGATACCCACTTTCAGATTTTGGGGTTATGTTTGGTGAGCCTTCTGATTGGCTCTGTTTTTCAGGGATTAAGGAGAAGAAATTGAGTGTTTTGAGCAAAATCTCTCATGGGTTTGTGGTTTTGTTCCTTTTGGTGGTTTGTTTTGAGCCTGTTTTGAGCCAGGATTGGGATGGTGTGGTTGTGACTCAAGCTGATTTTCAATCCCTTCAGGCATTCAAGCAAGAACTTGATGATCCTAAAGGGTTTTTGAAGAGTTGGAATGATAGTGGATTTGGGGCTTGTTCTGGTGGTTGGGCTGGGATTAAATGTGCTATGGGACAGGTTATTGTGATTCAGCTTCCATGGAAGGGGTTAGGAGGTAAAATCACTGAAAAAATTGGCCAACTTCAGGGTCTAAGGAAGCTGAGTTTACATGACAACTTCATTGGTGGATCAATCCCTTCAATGTTGGGGCTTCTTCCTAATCTTAGAGGGGTTCAGTTGTTCAACAATCGGTTTTCGGGTTCCATCCCGCCTTCCTTGGGCCTTTGTCCTTTGCTTCAAACTCTTCACATCAGTAACAATTTGCTTACTGGAACAATCCCTTCAAGTCTGGCCAACTCCACTAAGCTCTATTGGCTTAACTTGAGCTACAACTCGTTATCGGGTCCGATCCCGACGAGTCTCGCTCGATCGGTATCGCTTACTTTCCTTGATCTTCAACACAACAATCTCTCTGGCAGCATTCCTGATTCTTGGGGCGGCGATGCCTCTGACCAAAACCGGGTGTTTCAGCTCAAGTCTTTGACTCTTGATGACAATCTCCTCTCAGGTACTATACCCACTTCTTTGAGCAAGTTAAGTGAGCTTCAAGTGGTTTCTCTTAGCCACAATAGATTGATTGGTGGCATTCCTGAAGAAATTAGTAGGCTTTCTTTGCTCAAAACTTTGGATGTTTCTAATAATTTCCTTAATGGAAGTATGCCTCAAGGTTTTGATAGATTGAGAAATCTCTCTGTTCTCAATCTGAGTAGAAACAGATTCAATGGCCAAATTCCTTCAACTTTAGGGAACATTTCAGCACTGACACAACTTGATTTATCTCATAACAACCTAACTGGAGAAATACCTCCTTCTCTTGCTGATTTGAAAGCTCTTCGATCCTTAAATGTCTCTTACAATGACCTTTCGGGTTTGGTTCCTCCGACTCTTGCCAAAAAATTCAATGCAAGTTCCTTTGTTGGGAACATTCAGCTCTGTGGGTTCAGTGGTTCGATGTGCCTGTCCCCGGCCCCTTCTCAAGAAGCTCTCGCTCCTCCACCAGAAACTTCGACATCCCGACGTCGGAAGTTAACTACTAAAGATATGATCCTCATAGCAGCAGGAGCCCTCCTTCTAGTATTGGTTATCCTTGTGTTTGTACTGCTTTGCTGCTTGATTAGGAAAAGGACTGCTTCAAAAGGAAAAGATGGCGGTGAGGCCACGGCAGCCGGGGCTGCCGAGAAGGGCGCCCCTCCGACTGGCAGTGAAGTTGAAGCGGCGGGAGGGGATGTTGGAGGAAAGCTCGTCCATTTCGAGGGGCAAACGGTTTTCACAGCAGATGATCTTTTGTGTGCAACAGCAGAAATAATGGGAAAGAGTACTTATGGGACTGTTTACAAGGCCACATTGGAGGATGGAAATCAAGTTGCAGTTAAGAGATTGAGAGAGAAGATCATTAAAAGCCAGAAAGAATTTGAAGCAGAGGTCAACATACTTGGCAAGATCAGGCATCCAAATCTTCTAGCTTTAAGAGCTTATTACTTGGGACCTAAAGGAGAAAAGCTTCTTGTTTTCGATTACATGCCGAACGGGAGTCTTGCAGCATTCCTGCACGCTCGTGGACCAGATACATCCATCAATTGGCCAACAAGGATGAAAATAGCTCAGGGTATGACTCGTGGTCTGCGTCACCTTCACATGGACGAGAACAGCATCCATGGAAACCTAACATCCAGCAACCTTCTACTTGATGAGCACATAAATGCTAAGATAGCCGACTTTGGTCTATCAAGGTTGATGACTGCCGCTGCAAGCTCAAATGTGATAGCAACTGCGGGGGCACTCGGGTACCGAGCGCCGGAGCTCTCGAAGCTGAAGAAGGCCAACACGAAAACTGACATATACAGTCTTGGGGTGATTATATTGGAACTTCTCACTGGAAAGTCCCCGGGCGAAGCCATGAATGGAGGAGTTGATTTGCCACAATGGGTTGCATCCATTGTCAAAGAGGAGTGGACTAATGAAGTTTTCGATTTGGAGCTGATGAGAGATGCATCTACCATTGGAGATGAGTTGCTAAACACTCTGAAGCTCGCTTTGCATTGTGTCGACCCTTCACCGTCAGCGAGACCAGAAGTTCAACAAGTTCTGCAACAACTGGAAGAGATTAGGCCAGAAACTGATCCCAGTTCTGGAGATGATGGAGCTGGTGGAGGAGTCCCAACAAGTGAGTGA 2517 45.49 MDLIQTPSHSNSCWRYPLSDFGVMFGEPSDWLCFSGIKEKKLSVLSKISHGFVVLFLLVVCFEPVLSQDWDGVVVTQADFQSLQAFKQELDDPKGFLKSWNDSGFGACSGGWAGIKCAMGQVIVIQLPWKGLGGKITEKIGQLQGLRKLSLHDNFIGGSIPSMLGLLPNLRGVQLFNNRFSGSIPPSLGLCPLLQTLHISNNLLTGTIPSSLANSTKLYWLNLSYNSLSGPIPTSLARSVSLTFLDLQHNNLSGSIPDSWGGDASDQNRVFQLKSLTLDDNLLSGTIPTSLSKLSELQVVSLSHNRLIGGIPEEISRLSLLKTLDVSNNFLNGSMPQGFDRLRNLSVLNLSRNRFNGQIPSTLGNISALTQLDLSHNNLTGEIPPSLADLKALRSLNVSYNDLSGLVPPTLAKKFNASSFVGNIQLCGFSGSMCLSPAPSQEALAPPPETSTSRRRKLTTKDMILIAAGALLLVLVILVFVLLCCLIRKRTASKGKDGGEATAAGAAEKGAPPTGSEVEAAGGDVGGKLVHFEGQTVFTADDLLCATAEIMGKSTYGTVYKATLEDGNQVAVKRLREKIIKSQKEFEAEVNILGKIRHPNLLALRAYYLGPKGEKLLVFDYMPNGSLAAFLHARGPDTSINWPTRMKIAQGMTRGLRHLHMDENSIHGNLTSSNLLLDEHINAKIADFGLSRLMTAAASSNVIATAGALGYRAPELSKLKKANTKTDIYSLGVIILELLTGKSPGEAMNGGVDLPQWVASIVKEEWTNEVFDLELMRDASTIGDELLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPETDPSSGDDGAGGGVPTSE 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 40926212 40929207 - Sed0022030.1 Sed04g2935 711538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2935 838 ProSiteProfiles Leucine-rich repeat profile. 368 391 IPR001611 GO:0005515(InterPro)
Sed04g2935 838 SMART LRR_typ_2 366 389 IPR003591 -
Sed04g2935 838 SMART LRR_typ_2 342 365 IPR003591 -
Sed04g2935 838 SMART LRR_typ_2 390 413 IPR003591 -
Sed04g2935 838 SMART LRR_typ_2 240 263 IPR003591 -
Sed04g2935 838 SMART LRR_typ_2 167 191 IPR003591 -
Sed04g2935 838 SMART LRR_typ_2 294 318 IPR003591 -
Sed04g2935 838 MobiDBLite consensus disorder prediction 816 838 - -
Sed04g2935 838 ProSiteProfiles Protein kinase domain profile. 545 817 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2935 838 FunFam Leucine-rich repeat receptor-like protein kinase 531 621 - -
Sed04g2935 838 Pfam Protein kinase domain 548 813 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2935 838 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 63 825 IPR052451 -
Sed04g2935 838 Gene3D Ribonuclease Inhibitor 269 437 IPR032675 -
Sed04g2935 838 FunFam Leucine-rich repeat receptor-like protein kinase 76 234 - -
Sed04g2935 838 Gene3D Transferase(Phosphotransferase) domain 1 623 828 - -
Sed04g2935 838 SUPERFAMILY Protein kinase-like (PK-like) 549 815 IPR011009 -
Sed04g2935 838 Pfam Leucine rich repeat N-terminal domain 78 117 IPR013210 -
Sed04g2935 838 SUPERFAMILY L domain-like 116 427 - -
Sed04g2935 838 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 262 437 - -
Sed04g2935 838 Gene3D Phosphorylase Kinase; domain 1 551 622 - -
Sed04g2935 838 Gene3D Ribonuclease Inhibitor 75 268 IPR032675 -
Sed04g2935 838 Pfam Leucine rich repeat 272 329 IPR001611 GO:0005515(InterPro)
Sed04g2935 838 Pfam Leucine rich repeat 193 252 IPR001611 GO:0005515(InterPro)
Sed04g2935 838 Pfam Leucine rich repeat 343 403 IPR001611 GO:0005515(InterPro)
Sed04g2935 838 MobiDBLite consensus disorder prediction 495 518 - -
Sed04g2935 838 PRINTS Leucine-rich repeat signature 366 379 - -
Sed04g2935 838 PRINTS Leucine-rich repeat signature 242 255 - -
Sed04g2935 838 CDD STKc_IRAK 551 817 - -
Sed04g2935 838 FunFam Pollen receptor-like kinase 1 622 827 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1121 Sed-Chr4:21586953 Sed04g2935 Sed-Chr4:40926212 1.00E-142 dispersed
Sed04g2935 Sed-Chr4:40926212 Sed06g1908 Sed-Chr6:43437395 4.40E-69 dispersed
Sed07g0201 Sed-Chr7:1717943 Sed04g2935 Sed-Chr4:40926212 8.70E-68 transposed
Sed04g0362 Sed-Chr4:2632695 Sed04g2935 Sed-Chr4:40926212 1.10E-242 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79062 PF00069 Pkinase 4.50E-40 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2935 - - - 0.0