Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2946 ATGTCCAAAGAAAGAGAGAGATTCGACGAGATAGCGAAGAAGATAAAGAGAGAGACCGATGTGTCGTCAAATATTAACCCCGAACAGCAAGTTATGGGGATCAGATCACGACACGCACTGCAGGGTCCTCCTGGGACACTCAACACCATTACTCCATGCGCAGCCTGCAAGCTTTTAAGAAGAAGATGTGCACAAGAATGCCCCTTCTCTCCGTACTTCTCCCCCCACGAGCCCCACAAGTTTGCCTCCGTCCACAAGGTCTTCGGCGCTAGCAATGTCTCGAAGATGCTTATGGAAGTTGCCGAGAATCAAAGAGCAGACGCGGCCAACAGCCTAGTTTATGAAGCTAATGTGAGGCTGAGAGATCCAGTCTATGGTTGCATGGGCGCCATTTCAGCCCTTCAACACCAAACCCAAGCTTTACAAGCTGAGCTCAATGCAGTTAGGGCTGAGATTTTGAGACATAAATATAGAGAAGCTAACATCATTCACTCTCCCCCTCAACACCAACATGTCCCTTTTCTTTCTTCCTCGATCGAGGTTGTTTCGGTTGCCGTACCGCCTCCACCACCGCCTCCCCCGCTAGCCCCACTGCCTCATCATGATGCTTCTTCCTCTTCGTCTTCCTTGTACAACCGGCCCGCGGGGGCCGTGCCTGATTATAGTCTTATTTCAAGTGATGAAAATGTCACCTACTTTGTTGGTACTTCCACGGCTCATCAATTGAATTCTTAG 735 49.66 MSKERERFDEIAKKIKRETDVSSNINPEQQVMGIRSRHALQGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVAENQRADAANSLVYEANVRLRDPVYGCMGAISALQHQTQALQAELNAVRAEILRHKYREANIIHSPPQHQHVPFLSSSIEVVSVAVPPPPPPPPLAPLPHHDASSSSSSLYNRPAGAVPDYSLISSDENVTYFVGTSTAHQLNS 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 40984546 40987072 + Sed0010734.1 Sed04g2946 711549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2946 244 ProSiteProfiles LOB domain profile. 51 152 IPR004883 -
Sed04g2946 244 MobiDBLite consensus disorder prediction 192 211 - -
Sed04g2946 244 Coils Coil 131 151 - -
Sed04g2946 244 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 50 164 - -
Sed04g2946 244 Pfam Lateral organ boundaries (LOB) domain 52 149 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2946 Sed-Chr4:40984546 Sed05g3295 Sed-Chr5:42296810 5.20E-39 dispersed
Sed03g0177 Sed-Chr3:1119493 Sed04g2946 Sed-Chr4:40984546 1.80E-20 transposed
Sed11g2121 Sed-Chr11:35104592 Sed04g2946 Sed-Chr4:40984546 6.00E-61 transposed
Sed04g2946 Sed-Chr4:40984546 Sed07g2592 Sed-Chr7:41488810 3.00E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38302 PF03195 LOB 9.40E-40 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2946 - - - 0.0