Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2948 ATGGATCTTGAGCATGGAAACTGTTGGGATTCTTCCAAGAAGGGTTCTTGGAAAACGGTTCTTCTATTGGCGTATCAAAGCCTTGGCGTTGTTTATGGCGATTTGAGCATATCTCCTCTCTACGTTTACAGAAGCACTTTTGCTGAAGACATCCAACATTCAGATACCAATGAAGAAATCTATGGTGTTCTTTCATTTGTGTTCTGGACTCTCACTATTGTCCCCCTTTTCAAATACGTTTTTGTGGTTCTCAGAGCTGATGACAATGGCGAAGGAGGGACTTTTGCTCTGTACTCGTTAATTTGCAGACATGCTAAAGTGAGCCTTCTTCCCAGTAGACAAGTTGCAGATGAATCACTTTCCACTTATTTGCTTGAACATCCACCAGAGAAGAAGAAGCAATCTAAGGCTAAATTGCTGCTGGAGAAGCACAGGGCTCTGCATACTGCCTTGTTGATTCTTGTTCTTGTTGGGACTTGTATGGTGATTGGAGATGGGCTTCTCACTCCAGCAATTTCTGTTTTCTCAGCAGTTTCTGGACTTGAGTTATCCATGTCCAAGGCTCACCATCAGTATGCTGTAGTTCCAATCACTTGCTTCATCTTGGTTTGTCTATTTGCACTTCAACACTATGGTACACATCGAGTTGGCTTCTTCTTTGCTCCCGTTGTATTGACGTGGCTACTCTGCATCAGTACCCTTGGAATATACAATATTATTCAATGGAATCCACATGTTTATCAGGCTCTTTCTCCATATTACATGTTCAAGTTTTTGGAGAAGACAAGGAAGAGTGGTTGGATGTCACTGGGCGGTATATTGTTGTGCATAACAGGCTCAGAAGCAATGTTTGCTGATCTTGGTCACTTCTCATACACTGCAATACAGATTGCTTTCACCTTTCTCGTGTATCCAGCGCTTATATTGGCATACATGGGCCAAGCTGCTTACTTGTCTCAACATCACACTACCACCAACAACATTGGCTTCTATGATTCTGTTCCAGTGAGTGTGAGATGGCCAGTGATTGTAATTGCTATACTTGCTTCAGTTGTCGGAAGCCAAGCCATCATCAGTGGAACATTCTCCATTATAAACCAAAGCCAATCCCTTGGGTGCTTCCCTAGAGTGAAGGTTGTTCATACTTCTGATAAGATCCATGGCCAGATCTACATTCCGGAGATCAATTGGATTCTTATGATTCTCTGTGTTGCTGTTACCATTGGCTTTAGAGACATAAAACACCTCGGAAATGCATCAGGTCTGGCTGTAATGACTGTGATGCTTGTTACAACCTGTCTAACTTCTCTGGTGATTGTCCTCTGTTGGAACAAATCTCCACTTTTGGCTCTCTCCTTTTTTATCTTCTTTGGGTCTGTTGAATTGCTCTACTTCTCAGCTTCACTCACCAAGTTCAGGGAGGGCGCTTGGCTCCCCATTCTCCTAGCTCTCTTTCTCATGACCATCATGTTTGTTTGGCACTATGCAACCATCAAGAAGTATGAATTTGATCTCCACAACAAGGTTTCATTAGAATGGTTGCTAGCATTGGGGCCTAGCCTTGGAATTGCTCGCGTACCCGGCATTGGATTAGTCTTTACTGATCTCACCTCTGGTATCCCTGCCAATTTCTCCCGGTTTGTCACTAACCTTCCGGCATTTCATCGCATACTTGTTTTTGTGTGTATAAAGTCGGTACCAGTTCCTTTTGTAACTCCTGCCGAGCGGTATCTCGTTGGACGAGTAGGCCCGGCAGCACATCGGTCATATAGGTGCATTGTTCGATATGGTTACCGTGATGTGCACCAGGATGTGGACTCGTTTGAATCTGAATTAGTTGAGAAACTGGCAGATTTTATCCGTTATGACTGGTACAGAAAGCAAAGGGGGAACTCTTGCAGCGAGGAGGATGCAACCCATTCAAATGAATCGACAAGCGAGCATAGGCTGGCTGTGATTGGAACCATAGCATTTGCAGGCACGACTGCATATGAGGAAACTGTGCAGCCAGAAAGTGTATCAGTCGGGTTCCAAACGGTCGACAGCATCACCGATGTAATAGAAATGGAGCCATTGGGAGTAGAAAGAAGAGTCAGATTCGCCATAGATGAAGATTTCGAAGGTGACTCACAAGCCGAAACAGAAGCCCTTCTGCACGAAGAGCTAGAAGACCTTGTATCAGGCCAGCAATCTGGGACGGCGTTCATTCTCGGGCACTCGCATGTCCGAGCAAAACAGGGATCGTCTCTGTTGAAGAGATTGGCCATTAACTATGGCTACAACTTCCTGAGAAGGAACTGTAGAGGCGCAGACGTTGCTCTTAAGGTGCCACCAGTGTCTCTTCTTGAAGTTGGCATGGTTTATGTTGTATAA 2373 44.67 MDLEHGNCWDSSKKGSWKTVLLLAYQSLGVVYGDLSISPLYVYRSTFAEDIQHSDTNEEIYGVLSFVFWTLTIVPLFKYVFVVLRADDNGEGGTFALYSLICRHAKVSLLPSRQVADESLSTYLLEHPPEKKKQSKAKLLLEKHRALHTALLILVLVGTCMVIGDGLLTPAISVFSAVSGLELSMSKAHHQYAVVPITCFILVCLFALQHYGTHRVGFFFAPVVLTWLLCISTLGIYNIIQWNPHVYQALSPYYMFKFLEKTRKSGWMSLGGILLCITGSEAMFADLGHFSYTAIQIAFTFLVYPALILAYMGQAAYLSQHHTTTNNIGFYDSVPVSVRWPVIVIAILASVVGSQAIISGTFSIINQSQSLGCFPRVKVVHTSDKIHGQIYIPEINWILMILCVAVTIGFRDIKHLGNASGLAVMTVMLVTTCLTSLVIVLCWNKSPLLALSFFIFFGSVELLYFSASLTKFREGAWLPILLALFLMTIMFVWHYATIKKYEFDLHNKVSLEWLLALGPSLGIARVPGIGLVFTDLTSGIPANFSRFVTNLPAFHRILVFVCIKSVPVPFVTPAERYLVGRVGPAAHRSYRCIVRYGYRDVHQDVDSFESELVEKLADFIRYDWYRKQRGNSCSEEDATHSNESTSEHRLAVIGTIAFAGTTAYEETVQPESVSVGFQTVDSITDVIEMEPLGVERRVRFAIDEDFEGDSQAETEALLHEELEDLVSGQQSGTAFILGHSHVRAKQGSSLLKRLAINYGYNFLRRNCRGADVALKVPPVSLLEVGMVYVV 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 40991641 40998755 - Sed0025461.1 Sed04g2948 711551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2948 790 NCBIfam potassium uptake protein 23 789 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Sed04g2948 790 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 14 789 IPR003855 GO:0005886(PANTHER)|GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
Sed04g2948 790 Pfam K+ potassium transporter integral membrane domain 23 515 IPR053951 -
Sed04g2948 790 Pfam K+ potassium transporter C-terminal domain 527 788 IPR053952 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0342 Sed-Chr4:2523414 Sed04g2948 Sed-Chr4:40991641 0.00E+00 dispersed
Sed04g0343 Sed-Chr4:2523414 Sed04g2948 Sed-Chr4:40991641 0.00E+00 dispersed
Sed04g2948 Sed-Chr4:40991641 Sed04g2950 Sed-Chr4:40991641 0.00E+00 dispersed
Sed04g2948 Sed-Chr4:40991641 Sed04g2949 Sed-Chr4:40991641 0.00E+00 tandem
Sed04g0341 Sed-Chr4:2523414 Sed04g2948 Sed-Chr4:40991641 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2948 K03549 - csv:101211022 1478.38