Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2950 ATGGTGATTGGAGATGGGCTTCTCACTCCAGCAATTTCTGTTTTCTCAGCAGTTTCTGGACTTGAGTTATCCATGTCCAAGGCTCACCATCAGTATGCTGTAGTTCCAATCACTTGCTTCATCTTGGTTTGTCTATTTGCACTTCAACACTATGGTACACATCGAGTTGGCTTCTTCTTTGCTCCCGTTGTATTGACGTGGCTACTCTGCATCAGTACCCTTGGAATATACAATATTATTCAATGGAATCCACATGTTTATCAGGCTCTTTCTCCATATTACATGTTCAAGTTTTTGGAGAAGACAAGGAAGAGTGGTTGGATGTCACTGGGCGGTATATTGTTGTGCATAACAGGCTCAGAAGCAATGTTTGCTGATCTTGGTCACTTCTCATACACTGCAATACAGATTGCTTTCACCTTTCTCGTGTATCCAGCGCTTATATTGGCATACATGGGCCAAGCTGCTTACTTGTCTCAACATCACACTACCACCAACAACATTGGCTTCTATGATTCTGTTCCAGTGAGTGTGAGATGGCCAGTGATTGTAATTGCTATACTTGCTTCAGTTGTCGGAAGCCAAGCCATCATCAGTGGAACATTCTCCATTATAAACCAAAGCCAATCCCTTGGGTGCTTCCCTAGAGTGAAGGTTGTTCATACTTCTGATAAGATCCATGGCCAGATCTACATTCCGGAGATCAATTGGATTCTTATGATTCTCTGTGTTGCTGTTACCATTGGCTTTAGAGACATAAAACACCTCGGAAATGCATCAGGTCTGGCTGTAATGACTGTGATGCTTGTTACAACCTGTCTAACTTCTCTGGTGATTGTCCTCTGTTGGAACAAATCTCCACTTTTGGCTCTCTCCTTTTTTATCTTCTTTGGGTCTGTTGAATTGCTCTACTTCTCAGCTTCACTCACCAAGTTCAGGGAGGGCGCTTGGCTCCCCATTCTCCTAGCTCTCTTTCTCATGACCATCATGTTTGTTTGGCACTATGCAACCATCAAGAAGTATGAATTTGATCTCCACAACAAGGTTTCATTAGAATGGTTGCTAGCATTGGGGCCTAGCCTTGGAATTGCTCGCGTACCCGGCATTGGATTAGTCTTTACTGATCTCACCTCTGGTATCCCTGCCAATTTCTCCCGGTTTGTCACTAACCTTCCGGCATTTCATCGCATACTTGTTTTTGTGTGTATAAAGTCGGTACCAGTTCCTTTTGTAACTCCTGCCGAGCGGTATCTCGTTGGACGAGTAGGCCCGGCAGCACATCGGTCATATAGGTGCATTGTTCGATATGGTTACCGTGATGTGCACCAGGATGTGGACTCGTTTGAATCTGAATTAGTTGAGAAACTGGCAGATTTTATCCGTTATGACTGGTACAGAAAGCAAAGGGGGAACTCTTGCAGCGAGGAGGATGCAACCCATTCAAATGAATCGACAAGCGAGCATAGGCTGGCTGTGATTGGAACCATAGCATTTGCAGGCACGACTGCATATGAGGAAACTGTGCAGCCAGAAAGTGTATCAGTCGGGTTCCAAACGGTCGACAGCATCACCGATGTAATAGAAATGGAGCCATTGGGAGTAGAAAGAAGAGTCAGATTCGCCATAGATGAAGATTTCGAAGGTGACTCACAAGCCGAAACAGAAGCCCTTCTGCACGAAGAGCTAGAAGACCTTGTATCAGGCCAGCAATCTGGGACGGCGTTCATTCTCGGGCACTCGCATGTCCGAGCAAAACAGGGATCGTCTCTGTTGAAGAGATTGGCCATTAACTATGGCTACAACTTCCTGAGAAGGAACTGTAGAGGCGCAGACGTTGCTCTTAAGGTGCCACCAGTGTCTCTTCTTGAAGTTGGCATGGTTTATGTTGTATAA 1893 45.22 MVIGDGLLTPAISVFSAVSGLELSMSKAHHQYAVVPITCFILVCLFALQHYGTHRVGFFFAPVVLTWLLCISTLGIYNIIQWNPHVYQALSPYYMFKFLEKTRKSGWMSLGGILLCITGSEAMFADLGHFSYTAIQIAFTFLVYPALILAYMGQAAYLSQHHTTTNNIGFYDSVPVSVRWPVIVIAILASVVGSQAIISGTFSIINQSQSLGCFPRVKVVHTSDKIHGQIYIPEINWILMILCVAVTIGFRDIKHLGNASGLAVMTVMLVTTCLTSLVIVLCWNKSPLLALSFFIFFGSVELLYFSASLTKFREGAWLPILLALFLMTIMFVWHYATIKKYEFDLHNKVSLEWLLALGPSLGIARVPGIGLVFTDLTSGIPANFSRFVTNLPAFHRILVFVCIKSVPVPFVTPAERYLVGRVGPAAHRSYRCIVRYGYRDVHQDVDSFESELVEKLADFIRYDWYRKQRGNSCSEEDATHSNESTSEHRLAVIGTIAFAGTTAYEETVQPESVSVGFQTVDSITDVIEMEPLGVERRVRFAIDEDFEGDSQAETEALLHEELEDLVSGQQSGTAFILGHSHVRAKQGSSLLKRLAINYGYNFLRRNCRGADVALKVPPVSLLEVGMVYVV 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 40991641 40998755 - Sed0025461.3 Sed04g2950 711553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2950 630 Pfam K+ potassium transporter integral membrane domain 1 355 IPR053951 -
Sed04g2950 630 NCBIfam potassium uptake protein 1 629 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Sed04g2950 630 Pfam K+ potassium transporter C-terminal domain 367 628 IPR053952 -
Sed04g2950 630 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 1 629 IPR003855 GO:0005886(PANTHER)|GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2948 Sed-Chr4:40991641 Sed04g2950 Sed-Chr4:40991641 0.00E+00 dispersed
Sed04g2950 Sed-Chr4:40991641 Sed06g0572 Sed-Chr6:5021405 2.00E-223 dispersed
Sed04g2949 Sed-Chr4:40991641 Sed04g2950 Sed-Chr4:40991641 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2950 K03549 - csv:101211022 1176.77