Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2953 ATGGCTTCTTCGTTATTTTCCTCCTCTCTTTTTTTTCTTCCTTTCTTCTTCTTTCACCTCTCATTTCGCTCTGCCTTCGCCGATTTCGGTCATGCCACTTTTTACGGTGGCAGCGACGCGTCGGGTACTATGGGTGGAGCTTGTGGGTATGGGAACTTATACAGCCAAGGCTACGGCACGAACACGGTGGCGCTAAGCACGGCGCTGTTCAACAACGGCCTTAGCTGCGGCGCTTGCTACGAAATGACTTGTACCAATGATCCAAAATGGTGCCTGCCCGGAACCATCAAGGTCACAGCCACCAACTTCTGCCCGCCCAACTTTGCCCTGCCCAACAACAACGGCGGCTGGTGCAACCCTCCCCTCCAGCACTTCGACATGGCCGAGCCCGCCTTCCTCCAGATCGCTCAGTACCGCGCGGGAATCGTCCCCGTCTCCTTCCGAAGGATCCCATGCATGAAAAAAGGTGGAGTGAGGTTCACAATCAACGGGCACTCATATTTCAACCTAGTCCTAATCACGAACGTAGGTGGAGCGGGCGACGTCCACGCCGTGTCCATAAAGGGCTCTCGAACCGGATGGCAAGCCATGTCTCGAAATTGGGGCCAAAACTGGCAAAGCAACAACTATCTCAACGGCCAAGGCCTCTCATTTCAAGTCACTCTTAGCGATGGTCGCACTCTCACTGCTTACAACCTCGTACCTTCCAATTGGCAATTTGGAAAAACTTATGAAGGTCCTCAATTCTAA 750 53.07 MASSLFSSSLFFLPFFFFHLSFRSAFADFGHATFYGGSDASGTMGGACGYGNLYSQGYGTNTVALSTALFNNGLSCGACYEMTCTNDPKWCLPGTIKVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRIPCMKKGGVRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNNYLNGQGLSFQVTLSDGRTLTAYNLVPSNWQFGKTYEGPQF 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41018361 41022892 - Sed0022803.1 Sed04g2953 711556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2953 249 FunFam Expansin 157 249 - -
Sed04g2953 249 Gene3D - 157 249 IPR036749 -
Sed04g2953 249 SMART dpbb_1 62 147 IPR007112 -
Sed04g2953 249 Pfam Expansin C-terminal domain 158 235 IPR007117 -
Sed04g2953 249 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576(InterPro)
Sed04g2953 249 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576(InterPro)
Sed04g2953 249 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576(InterPro)
Sed04g2953 249 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576(InterPro)
Sed04g2953 249 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576(InterPro)
Sed04g2953 249 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
Sed04g2953 249 FunFam Expansin 19 153 - -
Sed04g2953 249 CDD DPBB_EXPA_N 30 152 - -
Sed04g2953 249 Gene3D - 21 153 IPR036908 -
Sed04g2953 249 SUPERFAMILY Barwin-like endoglucanases 17 175 IPR036908 -
Sed04g2953 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
Sed04g2953 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 157 IPR007112 -
Sed04g2953 249 SUPERFAMILY PHL pollen allergen 154 246 IPR036749 -
Sed04g2953 249 PANTHER EXPANSIN-A15 27 249 IPR002963 GO:0009664(InterPro)
Sed04g2953 249 Pfam Lytic transglycolase 62 147 IPR009009 -
Sed04g2953 249 PRINTS Expansin signature 232 248 IPR002963 GO:0009664(InterPro)
Sed04g2953 249 PRINTS Expansin signature 132 145 IPR002963 GO:0009664(InterPro)
Sed04g2953 249 PRINTS Expansin signature 115 132 IPR002963 GO:0009664(InterPro)
Sed04g2953 249 PRINTS Expansin signature 84 95 IPR002963 GO:0009664(InterPro)
Sed04g2953 249 PRINTS Expansin signature 168 189 IPR002963 GO:0009664(InterPro)
Sed04g2953 249 PRINTS Expansin signature 57 71 IPR002963 GO:0009664(InterPro)
Sed04g2953 249 PRINTS Expansin signature 96 106 IPR002963 GO:0009664(InterPro)
Sed04g2953 249 PRINTS Expansin signature 156 168 IPR002963 GO:0009664(InterPro)
Sed04g2953 249 PRINTS Expansin signature 203 224 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2953 Sed-Chr4:41018361 Sed11g2112 Sed-Chr11:35050955 3.00E-114 dispersed
Sed03g0339 Sed-Chr3:2053217 Sed04g2953 Sed-Chr4:41018361 4.90E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2953 - - - 0.0