Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2954 ATGGAAACCCCATCGAAGCAAATGGGTTCCTCTTCCAACCCCACCGCTCCATTTCGCGGTTCTTTCCACCGGCGAGCGCACTCCGAGGTCCACTTCCGGATTCCCGACGATCTCGATCTTGTAATGGACCCGTCTTCTGGGTTCGGAGATCTGGGCTTCGACGACGATCTGCTGTCCACCTTCATGGACGTCGACAGCATCGGATCCAGAATCGAGAATGGGTCGTTGCCCAAATCTGAGCCGGTGGAGAATGTCGACGACGGGGACAACAAAATCCCCCGCCCCAGACACCGCCATAGCAGCTCTGCCGATGGGTCCTCTATTATGGAGTCTATTGAGGCTAAGAAGGCCATGGATCCTGATAAGCTTGCCGAGTTGTGGACTATTGATCCTAAGCGTGCTAAGAGGATTTTGGCAAATAGACAGTCTGCGGCTCGGTCAAAAGAGAGGAAGGCTCACTACATAATTGAGCTCGAGAGGAAAGTTCAGAGCCTTCAGACGGAAGCGACAACTCTTTCAGCACAACTCACATTGTACCAGAGAGATGCCACTGGACTTTCAACCGAAAACGCGGAGCTCAAACTTCGCCTACAAGCTATGGAACAACAAGCTGATTTACGCGATGCTCTTAATGATGCATTGAAAAAGGAAGTCGAACGGTTCAAAATCGCGACTGGAGAAGTAATGACAGCTACAGATTCATACAACTTCGGAATGCCTCAAGTTGCATATCCCCAATCTTGCTTTCCACACCAACCACAACCCGGGCAATACAACACACAGAGGATAAATAGGCCACAAGTTCATCCAATCCATTCTAATTTACCGAACCCGCATCAGGCTATGTTTGTTGCATCCCACCAGCCACATGCCTTGACGGAAATGTTTCACCAGGATCCTGTTAGCCGATTGCAGGGTCTCGATATCGGTAGCAGAGGCGTAGAATTAAAGCTAGAAGACTCCATATCAGTCGGTGAAAGTAGCAGTGCATTTTAA 996 49.8 METPSKQMGSSSNPTAPFRGSFHRRAHSEVHFRIPDDLDLVMDPSSGFGDLGFDDDLLSTFMDVDSIGSRIENGSLPKSEPVENVDDGDNKIPRPRHRHSSSADGSSIMESIEAKKAMDPDKLAELWTIDPKRAKRILANRQSAARSKERKAHYIIELERKVQSLQTEATTLSAQLTLYQRDATGLSTENAELKLRLQAMEQQADLRDALNDALKKEVERFKIATGEVMTATDSYNFGMPQVAYPQSCFPHQPQPGQYNTQRINRPQVHPIHSNLPNPHQAMFVASHQPHALTEMFHQDPVSRLQGLDIGSRGVELKLEDSISVGESSSAF 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41036407 41042546 - Sed0026670.1 Sed04g2954 711557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2954 331 MobiDBLite consensus disorder prediction 69 106 - -
Sed04g2954 331 Coils Coil 183 203 - -
Sed04g2954 331 Gene3D - 131 183 - -
Sed04g2954 331 Coils Coil 155 175 - -
Sed04g2954 331 CDD bZIP_plant_RF2 133 182 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g2954 331 MobiDBLite consensus disorder prediction 82 103 - -
Sed04g2954 331 SMART brlzneu 128 192 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g2954 331 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 130 193 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g2954 331 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 10 278 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed04g2954 331 MobiDBLite consensus disorder prediction 1 22 - -
Sed04g2954 331 Pfam bZIP transcription factor 132 184 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g2954 331 MobiDBLite consensus disorder prediction 1 18 - -
Sed04g2954 331 FunFam probable transcription factor PosF21 131 184 - -
Sed04g2954 331 SUPERFAMILY Leucine zipper domain 132 185 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0333 Sed-Chr4:2482575 Sed04g2954 Sed-Chr4:41036407 4.00E-84 dispersed
Sed04g2954 Sed-Chr4:41036407 Sed05g3342 Sed-Chr5:42715804 5.40E-71 dispersed
Sed04g0332 Sed-Chr4:2482575 Sed04g2954 Sed-Chr4:41036407 2.70E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38303 PF00170 bZIP_1 5.60E-09 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2954 - - - 0.0