Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g2954 | ATGGAAACCCCATCGAAGCAAATGGGTTCCTCTTCCAACCCCACCGCTCCATTTCGCGGTTCTTTCCACCGGCGAGCGCACTCCGAGGTCCACTTCCGGATTCCCGACGATCTCGATCTTGTAATGGACCCGTCTTCTGGGTTCGGAGATCTGGGCTTCGACGACGATCTGCTGTCCACCTTCATGGACGTCGACAGCATCGGATCCAGAATCGAGAATGGGTCGTTGCCCAAATCTGAGCCGGTGGAGAATGTCGACGACGGGGACAACAAAATCCCCCGCCCCAGACACCGCCATAGCAGCTCTGCCGATGGGTCCTCTATTATGGAGTCTATTGAGGCTAAGAAGGCCATGGATCCTGATAAGCTTGCCGAGTTGTGGACTATTGATCCTAAGCGTGCTAAGAGGATTTTGGCAAATAGACAGTCTGCGGCTCGGTCAAAAGAGAGGAAGGCTCACTACATAATTGAGCTCGAGAGGAAAGTTCAGAGCCTTCAGACGGAAGCGACAACTCTTTCAGCACAACTCACATTGTACCAGAGAGATGCCACTGGACTTTCAACCGAAAACGCGGAGCTCAAACTTCGCCTACAAGCTATGGAACAACAAGCTGATTTACGCGATGCTCTTAATGATGCATTGAAAAAGGAAGTCGAACGGTTCAAAATCGCGACTGGAGAAGTAATGACAGCTACAGATTCATACAACTTCGGAATGCCTCAAGTTGCATATCCCCAATCTTGCTTTCCACACCAACCACAACCCGGGCAATACAACACACAGAGGATAAATAGGCCACAAGTTCATCCAATCCATTCTAATTTACCGAACCCGCATCAGGCTATGTTTGTTGCATCCCACCAGCCACATGCCTTGACGGAAATGTTTCACCAGGATCCTGTTAGCCGATTGCAGGGTCTCGATATCGGTAGCAGAGGCGTAGAATTAAAGCTAGAAGACTCCATATCAGTCGGTGAAAGTAGCAGTGCATTTTAA | 996 | 49.8 | METPSKQMGSSSNPTAPFRGSFHRRAHSEVHFRIPDDLDLVMDPSSGFGDLGFDDDLLSTFMDVDSIGSRIENGSLPKSEPVENVDDGDNKIPRPRHRHSSSADGSSIMESIEAKKAMDPDKLAELWTIDPKRAKRILANRQSAARSKERKAHYIIELERKVQSLQTEATTLSAQLTLYQRDATGLSTENAELKLRLQAMEQQADLRDALNDALKKEVERFKIATGEVMTATDSYNFGMPQVAYPQSCFPHQPQPGQYNTQRINRPQVHPIHSNLPNPHQAMFVASHQPHALTEMFHQDPVSRLQGLDIGSRGVELKLEDSISVGESSSAF | 331 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 41036407 | 41042546 | - | Sed0026670.1 | Sed04g2954 | 711557 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g2954 | 331 | MobiDBLite | consensus disorder prediction | 69 | 106 | - | - | |
Sed04g2954 | 331 | Coils | Coil | 183 | 203 | - | - | |
Sed04g2954 | 331 | Gene3D | - | 131 | 183 | - | - | |
Sed04g2954 | 331 | Coils | Coil | 155 | 175 | - | - | |
Sed04g2954 | 331 | CDD | bZIP_plant_RF2 | 133 | 182 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g2954 | 331 | MobiDBLite | consensus disorder prediction | 82 | 103 | - | - | |
Sed04g2954 | 331 | SMART | brlzneu | 128 | 192 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g2954 | 331 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 130 | 193 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g2954 | 331 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 10 | 278 | - | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Sed04g2954 | 331 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Sed04g2954 | 331 | Pfam | bZIP transcription factor | 132 | 184 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g2954 | 331 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Sed04g2954 | 331 | FunFam | probable transcription factor PosF21 | 131 | 184 | - | - | |
Sed04g2954 | 331 | SUPERFAMILY | Leucine zipper domain | 132 | 185 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0333 | Sed-Chr4:2482575 | Sed04g2954 | Sed-Chr4:41036407 | 4.00E-84 | dispersed | |
Sed04g2954 | Sed-Chr4:41036407 | Sed05g3342 | Sed-Chr5:42715804 | 5.40E-71 | dispersed | |
Sed04g0332 | Sed-Chr4:2482575 | Sed04g2954 | Sed-Chr4:41036407 | 2.70E-134 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38303 | PF00170 | bZIP_1 | 5.60E-09 | CL0018 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g2954 | - | - | - | 0.0 |