Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2965 ATGTCTAACGAAGACTTGAACGGCCTGAACTCCCACCTCCTCTTCCCCGACGAACCCATCTCCTTCAGTTGCTCATCCGCCGCCCCCCACCGCCCCGACCCACCTCCCAAAACCCGCCAGCTCTGCGGCTTCATGGACGACAAGCTCTTCCCCGTCGACCGCGACCGCTTCTTTCCCCAACAGCCTGTCTTCGCTGACGCCCGCAATTGGAATGGGAATGGCACTCCCAGACCTCCAACTGGGAAAGGATCGGATGAGGACGACGACGACGACGATGAGGATGATGAAGATGAACTCGATGATGATGTTGAAGGGCTTGTTTCTTTGGATGATGTCAATAAGTGCGCCAAAACTGCTAACCCCAACAATGAGAGAACCGATCACGGTGGTGGGACTTTCTTCGTCAAGGATGGGATGGTTGTTTCTTCATCAGCAGAAGCAGCTCAGAGTGAGAATCATCATCAGGGGAGATTGGGGAACTACCCTAATGCTGTTACGATTGCAGAACATGAAGGGGAGGCTTATTATTCTCAGTATTTGCAAGGCACTGAGGGGTCTGCTTCTGGGCAGAAGGATTTGGCTATGGATAATGGATGTCGTTTAGGGAGAAGGGATGTTTCGCTCTCGGCCGAGCCTAGAGAGTCTCTGAGAGCAATTCTCACAGACCCTGTGACGGGCGCTCTCATGGACGATGCGATGATATTACCATGTGGGCATTCCTTTGGTAGTGGTGGAATAGAACATGTTCTTAGAGTAAAATCTTGTTACACGTGTTCTCAGTCGGTTTCTGAAGACTCTATTGCTCAAAACTTATCTTTTCAAGCTGCGGTTCAAGCATTCCGCCGGGAAGAAGAAATATTATTTTACCGCTCACCAAAAAGGAGAAGGGAGAGGTTTGAGCAGGACAAGGGTGCTTATGGTGATTCGACTATGGATACGCCAAGGGGTCGAGGTGTTCAGTTTCCTTTTGCAGTGACAGATCGGGTAATTATCAAGGGGAACAAGAGGACACCGCAGCGTTTTGTGGGACGGGAGGCTGTTGTTACAACACAGTGCTTGAATGGATGGTATGTGGTGAAAACACTAGACAATGCAGAGAGTGTAAAGTTGCAATACCGTTCGCTTGCAAAGGTTCCAAACGATGCAGTACCAAAAACGACAAGGAAGATCACTCCGAATTGGCTTTAG 1188 49.83 MSNEDLNGLNSHLLFPDEPISFSCSSAAPHRPDPPPKTRQLCGFMDDKLFPVDRDRFFPQQPVFADARNWNGNGTPRPPTGKGSDEDDDDDDEDDEDELDDDVEGLVSLDDVNKCAKTANPNNERTDHGGGTFFVKDGMVVSSSAEAAQSENHHQGRLGNYPNAVTIAEHEGEAYYSQYLQGTEGSASGQKDLAMDNGCRLGRRDVSLSAEPRESLRAILTDPVTGALMDDAMILPCGHSFGSGGIEHVLRVKSCYTCSQSVSEDSIAQNLSFQAAVQAFRREEEILFYRSPKRRRERFEQDKGAYGDSTMDTPRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPNDAVPKTTRKITPNWL 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41068852 41073061 - Sed0009031.2 Sed04g2965 711568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2965 395 MobiDBLite consensus disorder prediction 18 42 - -
Sed04g2965 395 MobiDBLite consensus disorder prediction 55 104 - -
Sed04g2965 395 SUPERFAMILY RING/U-box 214 288 - -
Sed04g2965 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 286 IPR013083 -
Sed04g2965 395 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 134 382 - -
Sed04g2965 395 MobiDBLite consensus disorder prediction 85 104 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2965 Sed-Chr4:41068852 Sed06g0254 Sed-Chr6:2081943 7.90E-37 dispersed
Sed04g2964 Sed-Chr4:41068852 Sed04g2965 Sed-Chr4:41068852 9.50E-211 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2965 - - - 0.0