Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2965 ATGTCTAACGAAGACTTGAACGGCCTGAACTCCCACCTCCTCTTCCCCGACGAACCCATCTCCTTCAGTTGCTCATCCGCCGCCCCCCACCGCCCCGACCCACCTCCCAAAACCCGCCAGCTCTGCGGCTTCATGGACGACAAGCTCTTCCCCGTCGACCGCGACCGCTTCTTTCCCCAACAGCCTGTCTTCGCTGACGCCCGCAATTGGAATGGGAATGGCACTCCCAGACCTCCAACTGGGAAAGGATCGGATGAGGACGACGACGACGACGATGAGGATGATGAAGATGAACTCGATGATGATGTTGAAGGGCTTGTTTCTTTGGATGATGTCAATAAGTGCGCCAAAACTGCTAACCCCAACAATGAGAGAACCGATCACGGTGGTGGGACTTTCTTCGTCAAGGATGGGATGGTTGTTTCTTCATCAGCAGAAGCAGCTCAGAGTGAGAATCATCATCAGGGGAGATTGGGGAACTACCCTAATGCTGTTACGATTGCAGAACATGAAGGGGAGGCTTATTATTCTCAGTATTTGCAAGGCACTGAGGGGTCTGCTTCTGGGCAGAAGGATTTGGCTATGGATAATGGATGTCGTTTAGGGAGAAGGGATGTTTCGCTCTCGGCCGAGCCTAGAGAGTCTCTGAGAGCAATTCTCACAGACCCTGTGACGGGCGCTCTCATGGACGATGCGATGATATTACCATGTGGGCATTCCTTTGGTAGTGGTGGAATAGAACATGTTCTTAGAGTAAAATCTTGTTACACGTGTTCTCAGTCGGTTTCTGAAGACTCTATTGCTCAAAACTTATCTTTTCAAGCTGCGGTTCAAGCATTCCGCCGGGAAGAAGAAATATTATTTTACCGCTCACCAAAAAGGAGAAGGGAGAGGTTTGAGCAGGACAAGGGTGCTTATGGTGATTCGACTATGGATACGCCAAGGGGTCGAGGTGTTCAGTTTCCTTTTGCAGTGACAGATCGGGTAATTATCAAGGGGAACAAGAGGACACCGCAGCGTTTTGTGGGACGGGAGGCTGTTGTTACAACACAGTGCTTGAATGGATGGTATGTGGTGAAAACACTAGACAATGCAGAGAGTGTAAAGTTGCAATACCGTTCGCTTGCAAAGGTTCCAAACGATGCAGTACCAAAAACGACAAGGAAGATCACTCCGAATTGGCTTTAG 1188 49.83 MSNEDLNGLNSHLLFPDEPISFSCSSAAPHRPDPPPKTRQLCGFMDDKLFPVDRDRFFPQQPVFADARNWNGNGTPRPPTGKGSDEDDDDDDEDDEDELDDDVEGLVSLDDVNKCAKTANPNNERTDHGGGTFFVKDGMVVSSSAEAAQSENHHQGRLGNYPNAVTIAEHEGEAYYSQYLQGTEGSASGQKDLAMDNGCRLGRRDVSLSAEPRESLRAILTDPVTGALMDDAMILPCGHSFGSGGIEHVLRVKSCYTCSQSVSEDSIAQNLSFQAAVQAFRREEEILFYRSPKRRRERFEQDKGAYGDSTMDTPRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPNDAVPKTTRKITPNWL 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41068852 41073061 - Sed0009031.2 Sed04g2965 711568

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2965 395 MobiDBLite consensus disorder prediction 18 42 - -
Sed04g2965 395 MobiDBLite consensus disorder prediction 55 104 - -
Sed04g2965 395 SUPERFAMILY RING/U-box 214 288 - -
Sed04g2965 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 286 IPR013083 -
Sed04g2965 395 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 134 382 - -
Sed04g2965 395 MobiDBLite consensus disorder prediction 85 104 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2965 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2965 Sed-Chr4:41068852 Sed06g0254 Sed-Chr6:2081943 7.90E-37 dispersed
Sed04g2964 Sed-Chr4:41068852 Sed04g2965 Sed-Chr4:41068852 9.50E-211 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed03g1802 . 2 729 Plant U-box Gene Family AT5G57035 52.3 1.7e-224 776.9
Sed04g2964 . 178 409 Plant U-box Gene Family AT5G05230 59.4 4.0e-67 253.1
Sed04g2965 . 164 395 Plant U-box Gene Family AT5G05230 59.4 4.0e-67 253.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004883 1 1 1 1 1 1 2 1 1 2 1 1 2 2 2 0 1 2 1 1 2 1 1 1 1 1 1 2 4 1 40