Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2966 ATGCGAGCATTGTTGAAGATGAAACGCTTGATTGAGCTCTTCGTCTTCTTCGTTTTGGCTCCACTCTGTGCTAGATGTGTAAACCTATCTTTAAACGACGACATTTTGGGCCTCATAGTGTTCAAAGCCGCCGTTCAAGATCCGAACAGGAATCTCGCGACCTGGGACGAAGACGACGATACTCCCTGCAACTGGAATGGTGTTCATTGTAACCCTAGATCCAAACGCGTCGTCGAGCTCAACCTCCGTGGATTCTCTCTTTCGGGTCGGGTCGGGCGGGGGCTTTTCCAGTTGGAGTTTCTGCAGAGACTTTCGCTCTCAGAGAACAATCTTACTGGAAATTTAAGCCCTAATTTCGCTCGACTTGATAATCTTCAGGTGATTGATTTGAGCGGGAATAGTTTCTCTGGTGTTGTTTTGGGTGATTTTTTTCTTCAATGTAGGTATTTGAGAGTTGTTTCTTTGGCTAACAACATGTTTTCTGGGAATATTCCTGATAGTTTGAGCTCGTGTGGGAGTCTCATATCTCTTAACTTGTCCTCGAATCGATTTTCGGGTCCTTTGCCTTCTGGGATTTGGTCTCTTAATGGTCTTCGATCACTGGACTTGTCTGATAACGCTTTGGTGGGTGAAATTCCTAAGTTAGTTGAAAATTTGTATAATCTGAGGACTCTTAACTTGAGGAAGAATCGATTTTCTGGACTGATCCCTGATGGTATCGGGAGTTGTTTGCTTATGAGGTTCATTGATCTTAGCGAGAATTCATTCTCTGGATATCTCCCTCAGTCAATGCAGAAACTTGTTTGGTGTACTAATCTGATTCTAAGCAGGAATTTGTTCCATGGAGATGTTCCTGAGTGGATAGGAGAATTGAAAAGCCTCGAAACTCTGGATTTTTCTGGGAACAATTTTACTGGTTATATTCCAACTACAATGAAGAGTCTTCAATATCTTAAAGTTTTGAATCTCTCTTCAAATGGCTTTACTGGTAGCTTCCCAGAGTCTGTGGTGAAATGCCAGAACCTTTTGGCAATAGATTTCAGTCATAATTCGATGTCGGGTACTCTTCCTACCATTGGAAGTTTAGGGAATCTGCAGTTTCTGGATCTGTCTGGGAATTCTTTTATTGGTTCCATTCCAGAAACTCTTGGAGATCTTAAAGCAGTAAGGATTGTTGATTTGAGTAGAAATCGGTTGAACGAAAGCATTCCCAAAGCTATCGGAGGAGCTGTGTCCCTAATGGAGCTGAAGCTGGATGAAAATTTTCTTGTGGGTGAAATTCCCTCTTCAATTGATCTTTGTTCTTCCCTTACAACTTTGTCTATATCACACAATAACTTAACTGGCCCGATACCAGCGGCATTAGCTAAACTTTCTTATCTCCAAAATGTCGACTTATCCTTCAATAACCTCAATGGAACCATTCCAAAGCAGTTGTCTAATCTTCCGAATCTTCTTGTGTTCAATATTTCTCACAACGACCTCAAAGGTGAGCTGCCTGCTGGCGTATTCTTTAACACTATCTCTCCGTCGTCCGTTGCTGGCAATCCGTCCCTCTGTGGCTCTGTTGTTAATAAGTCTTGCCCATCTGTTCTTCCAAAACCTATTGTTCTCGATCCCAACTCCACTTCAGATTCCATTTCGAGCTCACTGCCTCCAAGTATTAATCACAAAAGGAACAGAAACATCCTCAGCATTTCTGCCCTGGTTGCCATTGGTGCAGCTGCATTCATCATCATTGGCGTAATATTGATCACCATCCTCAACAGTCGTGTTCAATCACCCGCGTCTTCTTCGTCTGCAGCTGCACTTGCATTATCTGTTGGGGATTATTACAGCCATTCCTCCAGTCCGGATGTGAATTCTGGAAAGCTTGTGGTGTTATCAGGAGAACTTGACTTTAGCACCGGAGCACATGCCCTGCTGAACAAGGATTGTGAGCTTGGACGTGGTGGATTCGGAGCAGTTTATCATACTGTTCTTCGGGATGGACACTCTGTTGCAATCAAGAAGCTTACAGTTTCTAGCCTTGTTAAGTCCCAAGAGGATTTCGAGAGGGAAGTTAGGAAGTTTGGGAAAGTCAGGCACCAAAATCTTGTGGCACTCGAAGGTTATTATTGGACTCCATCACTCCAGCTTCTTATATATGAATTCGTCTCTAGAGGTAGCTTGTATGGGCTGCTACACGAAGCATCAGATGACAATGTCCTGTCATGGAATGAGAGGTTCGACATAATTCTCGGCACAGCGAAAGGACTGACTCAGTTGCATCAGTCAAACACAATCCACTATAACATAAAATCCAGCAATATTCTTATTGATAGCAATGGCCAACCTAAGGTGGGAGATTATGGTCTAGCAAGATTGCTGCCAATGTTAGACCGTTATGTTTTAAGTAGCAAGATCCAGAGTGCACTTGGATACATGGCACCCGAGTTTGCATGCAAGACGGTGAATATAACCGAAAAATGTGATGTGTATGGCTTCGGGATCTTGATTCTAGAGGTAGTTACAGGGAAGAAGCCTGTCGAGTACATGGAAGACGATGTAGCAGTCCTCTGCGACATGGTCAGAGGAGAAGTTGAAGAAGGAAGGGCTGAAGAATGCATCGACAAGAAGCTGAGGGGGAATTTCCCTGCCGAAGAGGCCGTTCCCGTATTAAAATTAGGCTTGATCTGCACCTCCCATGTGCCATCGAACCGACCTGATATGAGAGAAATGGTCAAGATACTGGAAATGATCAAATGCCCGTCTGAATTACAAGAGGAGTTGGGATAA 2778 43.66 MRALLKMKRLIELFVFFVLAPLCARCVNLSLNDDILGLIVFKAAVQDPNRNLATWDEDDDTPCNWNGVHCNPRSKRVVELNLRGFSLSGRVGRGLFQLEFLQRLSLSENNLTGNLSPNFARLDNLQVIDLSGNSFSGVVLGDFFLQCRYLRVVSLANNMFSGNIPDSLSSCGSLISLNLSSNRFSGPLPSGIWSLNGLRSLDLSDNALVGEIPKLVENLYNLRTLNLRKNRFSGLIPDGIGSCLLMRFIDLSENSFSGYLPQSMQKLVWCTNLILSRNLFHGDVPEWIGELKSLETLDFSGNNFTGYIPTTMKSLQYLKVLNLSSNGFTGSFPESVVKCQNLLAIDFSHNSMSGTLPTIGSLGNLQFLDLSGNSFIGSIPETLGDLKAVRIVDLSRNRLNESIPKAIGGAVSLMELKLDENFLVGEIPSSIDLCSSLTTLSISHNNLTGPIPAALAKLSYLQNVDLSFNNLNGTIPKQLSNLPNLLVFNISHNDLKGELPAGVFFNTISPSSVAGNPSLCGSVVNKSCPSVLPKPIVLDPNSTSDSISSSLPPSINHKRNRNILSISALVAIGAAAFIIIGVILITILNSRVQSPASSSSAAALALSVGDYYSHSSSPDVNSGKLVVLSGELDFSTGAHALLNKDCELGRGGFGAVYHTVLRDGHSVAIKKLTVSSLVKSQEDFEREVRKFGKVRHQNLVALEGYYWTPSLQLLIYEFVSRGSLYGLLHEASDDNVLSWNERFDIILGTAKGLTQLHQSNTIHYNIKSSNILIDSNGQPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVNITEKCDVYGFGILILEVVTGKKPVEYMEDDVAVLCDMVRGEVEEGRAEECIDKKLRGNFPAEEAVPVLKLGLICTSHVPSNRPDMREMVKILEMIKCPSELQEELG 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41078371 41082479 - Sed0000362.1 Sed04g2966 711569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2966 925 Pfam Protein tyrosine and serine/threonine kinase 644 910 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g2966 925 Gene3D Ribonuclease Inhibitor 194 270 IPR032675 -
Sed04g2966 925 Gene3D Ribonuclease Inhibitor 32 191 IPR032675 -
Sed04g2966 925 PANTHER RECEPTOR-LIKE PROTEIN 55 73 218 - -
Sed04g2966 925 ProSiteProfiles Protein kinase domain profile. 642 914 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2966 925 Gene3D Phosphorylase Kinase; domain 1 631 718 - -
Sed04g2966 925 FunFam Leucine-rich repeat receptor-like protein kinase PXC2 340 531 - -
Sed04g2966 925 Gene3D Transferase(Phosphotransferase) domain 1 719 923 - -
Sed04g2966 925 Pfam Leucine Rich Repeat 101 122 IPR001611 GO:0005515(InterPro)
Sed04g2966 925 Pfam Leucine Rich Repeat 173 195 IPR001611 GO:0005515(InterPro)
Sed04g2966 925 Pfam Leucine Rich Repeat 221 243 IPR001611 GO:0005515(InterPro)
Sed04g2966 925 Pfam Leucine Rich Repeat 124 143 IPR001611 GO:0005515(InterPro)
Sed04g2966 925 Pfam Leucine Rich Repeat 198 219 IPR001611 GO:0005515(InterPro)
Sed04g2966 925 Pfam Leucine Rich Repeat 364 386 IPR001611 GO:0005515(InterPro)
Sed04g2966 925 Pfam Leucine Rich Repeat 150 171 IPR001611 GO:0005515(InterPro)
Sed04g2966 925 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 719 920 - -
Sed04g2966 925 FunFam Inactive leucine-rich repeat receptor-like protein kinase 190 286 - -
Sed04g2966 925 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 636 718 - -
Sed04g2966 925 SUPERFAMILY Protein kinase-like (PK-like) 645 918 IPR011009 -
Sed04g2966 925 ProSitePatterns Protein kinases ATP-binding region signature. 648 671 IPR017441 GO:0005524(InterPro)
Sed04g2966 925 ProSiteProfiles Leucine-rich repeat profile. 364 387 IPR001611 GO:0005515(InterPro)
Sed04g2966 925 SUPERFAMILY L domain-like 32 285 - -
Sed04g2966 925 SUPERFAMILY L domain-like 195 553 - -
Sed04g2966 925 Gene3D Ribonuclease Inhibitor 271 531 IPR032675 -
Sed04g2966 925 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Sed04g2966 925 SMART LRR_typ_2 195 218 IPR003591 -
Sed04g2966 925 SMART LRR_typ_2 219 243 IPR003591 -
Sed04g2966 925 SMART LRR_typ_2 122 145 IPR003591 -
Sed04g2966 925 SMART LRR_typ_2 386 410 IPR003591 -
Sed04g2966 925 SMART LRR_typ_2 98 121 IPR003591 -
Sed04g2966 925 SMART LRR_typ_2 291 314 IPR003591 -
Sed04g2966 925 SMART LRR_typ_2 482 506 IPR003591 -
Sed04g2966 925 SMART LRR_typ_2 362 385 IPR003591 -
Sed04g2966 925 Pfam Leucine rich repeat 436 495 IPR001611 GO:0005515(InterPro)
Sed04g2966 925 Pfam Leucine rich repeat 271 327 IPR001611 GO:0005515(InterPro)
Sed04g2966 925 FunFam Leucine-rich repeat receptor-like protein kinase 31 189 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0737 Sed-Chr4:5951007 Sed04g2966 Sed-Chr4:41078371 3.80E-79 dispersed
Sed04g1100 Sed-Chr4:20423064 Sed04g2966 Sed-Chr4:41078371 4.00E-159 dispersed
Sed04g1101 Sed-Chr4:20423064 Sed04g2966 Sed-Chr4:41078371 4.00E-159 dispersed
Sed04g2966 Sed-Chr4:41078371 Sed05g1432 Sed-Chr5:27830925 3.10E-47 dispersed
Sed03g0337 Sed-Chr3:2012507 Sed04g2966 Sed-Chr4:41078371 1.80E-191 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79063 PF07714 PK_Tyr_Ser-Thr 1.20E-40 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2966 - - - 0.0