Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2967 ATGGAGGCTGCTGGTTCTTCCTCTGAAAATGGGTTCCAACCCCATGTTCTTGCTGTTGATGATAATCTTGTTGATCGAAAACTTGTTGAGAAGTTGCTCAAAAACTCCTCTTGTAAAGTAACCACCGTTGAAAATGGTCGCAGTGCTTTGGAGTTCTTGGGTTTATTAGATGATCATCAGCACAACAACACTTCCAGGTCAAAGGTGAACATGATTATCACAGATTATTGCATGCCAGGAATGTCCGGATACGAACTTCTCAAGAGAATCAAGAGATCATCAAGGATGAAGGAAGTTCCTGTGGTGATTGTATCATCGGAGAATGTGCCGACTCGCATCAACAAATGTTTGGAGGAAGGGGCAGAAATGTTCATGCTGAAACCTTTGAAGCAGTCTGATGTGGTAAAACTCAAGTGCCAGTTAATGAAGTGA 432 42.36 MEAAGSSSENGFQPHVLAVDDNLVDRKLVEKLLKNSSCKVTTVENGRSALEFLGLLDDHQHNNTSRSKVNMIITDYCMPGMSGYELLKRIKRSSRMKEVPVVIVSSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKCQLMK 143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41094912 41098234 + Sed0026361.1 Sed04g2967 711570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2967 143 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 138 IPR045279 GO:0009736(InterPro)
Sed04g2967 143 Pfam Response regulator receiver domain 16 136 IPR001789 GO:0000160(InterPro)
Sed04g2967 143 SUPERFAMILY CheY-like 14 136 IPR011006 -
Sed04g2967 143 SMART REC_2 14 138 IPR001789 GO:0000160(InterPro)
Sed04g2967 143 Gene3D - 11 143 - -
Sed04g2967 143 CDD REC_typeA_ARR 16 137 - -
Sed04g2967 143 ProSiteProfiles Response regulatory domain profile. 15 142 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2967 Sed-Chr4:41094912 Sed14g0016 Sed-Chr14:229095 4.00E-39 dispersed
Sed04g2967 Sed-Chr4:41094912 Sed03g2174 Sed-Chr3:15982439 1.80E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38304 PF00072 Response_reg 8.00E-23 CL0304 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2967 K14492 - csv:101208898 240.35