Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g2975 | ATGGAGAGAGGTGTAATTTCCAGCTGGACTGCGGCGGCGGTTGCGGCGGCGGTGCTGGCGGTGTTGGCCCATTTGTGGTATTGGGCGTGGAAGAGCACGGCGGAGGTGAGGAGGAAGCTGGCGGAGCAGGGAGTGACCGGGCCGCCGCCGTCTCCTCTGTACGGAAACCTGCCGGAGATGCAGAAAATCCAGCTGCAGGCGGCGGCCGTCGCTTCTCCGCCGTATCAACCGTCGGCGATTGTTGCTCACGATTATACCTCCACTCTCTTCCCTTATTTCGTCAAGTGGAGAAAACAATACGGCCCATTATACACGTACTCGACGGGGAGGAGGCAGCACCTGTACGCGAACAGAGTGGACGTGGTGAAGGACTTGAGCCTGAGCACCAACCTGCAGTTGGGGAAGCCCAAGTTCATATCCAAGAAGCTGGCCCCCATCCTCGGCCACAGCATCATCCGCTCCAACGGCCCCCTCTGGGCCATGCAGCGCAAGATCATCGCCCCCGAGTTCTTCATGGACCGGGTCCGGGCCATGACGGCGCTCATGGCCGACGCCGCCGCCGCGCTGGTCCAGAAGTGGGAGGGGAGGATCGGGGCGGCGGCGGCGGCGGAGTTCGAGGTGGATGAGGATCTGAGAGGGTTCTCCGCGGATGCGATTTCTAGGGCCTGCTTTGGGAGCTCCTATGAGAAGGGGAAGCGTATCTTTTCCAAGCTTAGGGATCTCCAGAAGTTGGTTACGGAGGCCCAGTTTCTGTTTGGCTACACTTCTTTCAGCGAAAGATTTTTTCAACCAAGCAAACACAGAAGAATAAAAAAGCTGGAAAAGGAGATAGAGTTATTAATATGGGAAACCGTTCAACAGAGGCAAAAAGAATGTTCCAAAACGACGTCCTTGGAAAAGGATCTGTTGCAGCTCATAATGGAGGCTGCCATGAATGACCCAACTGTGGGACCTTGTAGTGAATCCTCCAAGAAGTTCATTGTCGACAACTGCAAGAGCATCTACTTCGCCGGCCACGAGACCACCGCCCTCACCGCCACCTGGTGCTTCATGCTCCTCGCCCTCCACCCCGAATGGCAGGATCGAATCCGCTCCGACTTTGCTCAAGCTTGCCCCAATGGTCGCCTCGACTCTAATGCCATCTCTCAACTCAAATCGGTGAGTATGGTGGTCAACGAAACGTTGCGGTTGTACCCACCGGCATCATTTGTAGCAAGGGAGGCATTTGCCGATACACGATTAGGGAACATCGTGGTTCCAAAGGGCGTATGCATATGGACTTTAATTCCAACTTTGCATAGAGAAGTTGAAATATGGGGAGAGAATGCGAATGAGTTCAAGCCAGAGCGATTTGCGAACGGGATAGCCAAGGCTTGCAAGTTCCCTCAGGCGTACTTGCCGTTCGGAGCCGGCCCTCGGCTATGCCTAGGGAAAAACTTCGCATTGGTTGAGCTGAAGATCATTGTTTCTCTTGTGGTTTCCAAGTTTAAATTCTCACTGTCTCCTGAGTATCGCCATTGCCCTTCTTATAGAATGCTTGTGGAACCTGCCAATGGTGTGAAGATCGTCTTCCAAAGGATTTGA | 1584 | 54.42 | MERGVISSWTAAAVAAAVLAVLAHLWYWAWKSTAEVRRKLAEQGVTGPPPSPLYGNLPEMQKIQLQAAAVASPPYQPSAIVAHDYTSTLFPYFVKWRKQYGPLYTYSTGRRQHLYANRVDVVKDLSLSTNLQLGKPKFISKKLAPILGHSIIRSNGPLWAMQRKIIAPEFFMDRVRAMTALMADAAAALVQKWEGRIGAAAAAEFEVDEDLRGFSADAISRACFGSSYEKGKRIFSKLRDLQKLVTEAQFLFGYTSFSERFFQPSKHRRIKKLEKEIELLIWETVQQRQKECSKTTSLEKDLLQLIMEAAMNDPTVGPCSESSKKFIVDNCKSIYFAGHETTALTATWCFMLLALHPEWQDRIRSDFAQACPNGRLDSNAISQLKSVSMVVNETLRLYPPASFVAREAFADTRLGNIVVPKGVCIWTLIPTLHREVEIWGENANEFKPERFANGIAKACKFPQAYLPFGAGPRLCLGKNFALVELKIIVSLVVSKFKFSLSPEYRHCPSYRMLVEPANGVKIVFQRI | 527 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 41133394 | 41137435 | - | Sed0020977.1 | Sed04g2975 | 711578 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g2975 | 527 | PRINTS | E-class P450 group I signature | 97 | 116 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2975 | 527 | PRINTS | E-class P450 group I signature | 475 | 498 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2975 | 527 | PRINTS | E-class P450 group I signature | 465 | 475 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2975 | 527 | PRINTS | E-class P450 group I signature | 346 | 372 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2975 | 527 | PRINTS | E-class P450 group I signature | 326 | 343 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2975 | 527 | PRINTS | E-class P450 group I signature | 214 | 232 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2975 | 527 | Coils | Coil | 270 | 290 | - | - | |
| Sed04g2975 | 527 | Pfam | Cytochrome P450 | 88 | 521 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2975 | 527 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 20 | 519 | IPR050665 | GO:0004497(PANTHER) | |
| Sed04g2975 | 527 | SUPERFAMILY | Cytochrome P450 | 83 | 525 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2975 | 527 | Gene3D | Cytochrome P450 | 28 | 527 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2975 | 527 | PRINTS | P450 superfamily signature | 475 | 486 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2975 | 527 | PRINTS | P450 superfamily signature | 337 | 354 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2975 | 527 | PRINTS | P450 superfamily signature | 389 | 400 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2975 | 527 | PRINTS | P450 superfamily signature | 466 | 475 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2975 | 527 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 468 | 477 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g2975 | Sed-Chr4:41133394 | Sed09g0161 | Sed-Chr9:1253316 | 6.90E-129 | dispersed | |
| Sed04g2975 | Sed-Chr4:41133394 | Sed05g0502 | Sed-Chr5:3448947 | 1.30E-82 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g2975 | K20661 | - | csv:101216582 | 814.298 |