Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2999 ATGGCGAAAATCGATGTTCAACCGGCGATTCAAAGCTCCGGCAAGAGGCTAAAATTCTCCAAGCACGACGACGAGCAATTTGGAAACGAAGAAGAAGACGAAGAAGAAGGAGTGGAACAGGCGAGTGAGCTTCCATTGAAGCCCGGCCTCTTCTTCCCTATGACTCCAACTTCCTTCGTCGTCTCCGATGCTCTCGAGCCCGATTTCCCCGTCATCTACGTCAACAAAGTCTTCGAGATCTTCACCGGATACCGCGCCGATGAAGTCCTCGGCCAGAATTGTCGTTTCTTACAATATAGAGATCCTCATGCTCAAAGGCGCCACCCTTTGGTAGATCCAGTAGTTGTTTCTGAAATCAGAAGATGTCTCGAGGAAGGTGTTGAATTCCAAGGTGAACTTCTCAATTTCAGAAAGGATGGCACCCCTATGGTGAATAGGCTACGGCTTGCACCCATTCATGATGATGATGGTACTATAACCCACATTATAGGAATTCAAGTGTTTTCTGAGACAAAGATAGACCTTAATCGGTTGTCGTATCCCGTTTTTAAAGAGACTTGCGCCAAAAAATATGATCTATCAGGCAAAAGTGCTCATCTGATTGATCATTCGCCATTTGGTCAGCATAAAGAAATCTGTGGGATACTACAGCTTTCAGATGAAGTCTTGGCTCATAACATTTTATCACGCTTGACACCAAGAGATGTTGCATCTGTTGGATCAGTTTGTCGAAGAATTCGTCAATTGACAAAGAATGAACATTTAAGGAAGATGGTTTGTCAGAATGCATGGGGAAGAGAAGTGACCGTAACATTGGAACAAATGACAAAGAAACTTGGTTGGGGCCGCTTGGCCAGAGAACTTACCACTCTTGAAGCTGTATGTTGGAGAAAATTGACAGTTGGGGGAGCTGTGGAGCCTTTGCGTTGCAACTTTAGTGCTTGTGCAGCAGGTAATCGTCTCGTATTATTTGGTGGGGAAGGAGTCAATATGCAGCCCATGGATGATACGTTCGTTCTCAATCTTGATGCTGCAAATCCTGAGTGGCGCAGAGTAAGCGTGAAATCCTCCCCACCTGGACGCTGGGGCCACACTCTATCATGTTTAAATGATTCTTGGTTAGTAGTTTTTGGTGGATGTGGCAGTCAAGGATTGCTCAATGACGTGTTTGTACTCGATTTGGATGCTCAACAACCAACATGGAAAGAAATCTTTGGTGGAGCTCCTCCATTGCCCAGATCCTGGCATAGCTCCTGTATGATCGAAGGTTCTAAACTGGTTGTTTCAGGTGGTTGCACAGATGCCGGGGTTCTTCTCAGTGACACATACTTGTTGGATCTAACAACAGACAAGCCAACCTGGAGAGAGATTCCCACATCCGGGAATCCCCCTTCTAGATTAGGGCATTCTCTTTCAGTTTATGGTCGGACAAAGATTCTAATGTTTGGTGGACTTGCCAAGAGTGGACACTTACGCTTACGATCAGGCGAGGCGTACACTGTAGATTTAGGAGAGGAAGAACCCAGATGGAGGCAACTTGAGTGCAGTGCATTCACTGGCATTGGTGGTCAGAATGGTGTGGTTCCTCCTCCAAGACTCGATCACGTAGCAGTCAGCATGCCCTGTGGAAGGATTATAATTTTAGGAGGCTCCATTGCCGGGTTACATTCACCTTCTCAACTTTTCCTTTTGGATCCGGCTGAGGAGAAACCATCATGGAGGATTCTCAACGTTCCCGGTCAACCACCTAAATTTGCTTGGGGTCACAGTACTTGTATAGTCGGAGGGACAAGAGTTTTGGTATTGGGCGGCCACACCGGGGAAGAATGGATACTCAATGAATTGCACGAACTGTGCTTAGCTAGCAGGCAAGATTCAGATCTTTGA 1887 46.32 MAKIDVQPAIQSSGKRLKFSKHDDEQFGNEEEDEEEGVEQASELPLKPGLFFPMTPTSFVVSDALEPDFPVIYVNKVFEIFTGYRADEVLGQNCRFLQYRDPHAQRRHPLVDPVVVSEIRRCLEEGVEFQGELLNFRKDGTPMVNRLRLAPIHDDDGTITHIIGIQVFSETKIDLNRLSYPVFKETCAKKYDLSGKSAHLIDHSPFGQHKEICGILQLSDEVLAHNILSRLTPRDVASVGSVCRRIRQLTKNEHLRKMVCQNAWGREVTVTLEQMTKKLGWGRLARELTTLEAVCWRKLTVGGAVEPLRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSCLNDSWLVVFGGCGSQGLLNDVFVLDLDAQQPTWKEIFGGAPPLPRSWHSSCMIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPTWREIPTSGNPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTVDLGEEEPRWRQLECSAFTGIGGQNGVVPPPRLDHVAVSMPCGRIIILGGSIAGLHSPSQLFLLDPAEEKPSWRILNVPGQPPKFAWGHSTCIVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDL 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41257136 41260214 + Sed0017825.1 Sed04g2999 711602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2999 628 Gene3D PAS domain 51 177 - -
Sed04g2999 628 Gene3D - 209 259 - -
Sed04g2999 628 Pfam Kelch motif 533 580 IPR011498 GO:0005515(InterPro)
Sed04g2999 628 Gene3D - 288 496 IPR015915 GO:0005515(InterPro)
Sed04g2999 628 SUPERFAMILY Kelch motif 295 504 IPR015915 GO:0005515(InterPro)
Sed04g2999 628 CDD F-box_AtADO-like 214 260 - -
Sed04g2999 628 SUPERFAMILY F-box domain 210 267 IPR036047 GO:0005515(InterPro)
Sed04g2999 628 Gene3D - 497 626 IPR015915 GO:0005515(InterPro)
Sed04g2999 628 ProSiteProfiles PAS repeat profile. 71 102 IPR000014 -
Sed04g2999 628 Pfam PAS domain 65 166 IPR000014 -
Sed04g2999 628 SUPERFAMILY Kelch motif 528 619 IPR015915 GO:0005515(InterPro)
Sed04g2999 628 FunFam Adagio protein 1 48 177 - -
Sed04g2999 628 Pfam Galactose oxidase, central domain 309 359 - -
Sed04g2999 628 FunFam Putative LOV domain-containing protein 492 624 - -
Sed04g2999 628 Pfam Galactose oxidase, central domain 374 419 - -
Sed04g2999 628 Pfam Galactose oxidase, central domain 423 474 - -
Sed04g2999 628 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 54 623 - GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007623(PANTHER)|GO:0009637(PANTHER)|GO:0019005(PANTHER)
Sed04g2999 628 Pfam F-box-like 224 261 IPR001810 GO:0005515(InterPro)
Sed04g2999 628 CDD PAS 55 165 IPR000014 -
Sed04g2999 628 SMART pac_2 130 171 IPR001610 -
Sed04g2999 628 FunFam Putative LOV domain-containing protein 286 491 - -
Sed04g2999 628 SUPERFAMILY PYP-like sensor domain (PAS domain) 66 166 IPR035965 -
Sed04g2999 628 MobiDBLite consensus disorder prediction 1 40 - -
Sed04g2999 628 NCBIfam PAS domain S-box protein 71 165 IPR000014 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2999 K12116 - - csv:101222712 1201.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2999 Sed-Chr4:41257136 Sed04g3758 Sed-Chr4:46261632 1.10E-19 dispersed
Sed03g2827 Sed-Chr3:45313457 Sed04g2999 Sed-Chr4:41257136 3.60E-238 transposed
Sed11g0551 Sed-Chr11:5687349 Sed04g2999 Sed-Chr4:41257136 2.00E-241 transposed
Sed04g0299 Sed-Chr4:2223250 Sed04g2999 Sed-Chr4:41257136 4.00E-264 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g502 . Blo16g00757 . Bda11g00188 Bpe13g01006 . . . Cmo04g01103 . Cma04g01032 Cma04g00079 Car04g00963 Car04g00078 Sed04g2999 . . Bhi07g00405 Tan04g1496 Cmetu10g0634 Lac13g1318 Hepe01g0598 . . Cla07g00531 Cam07g0573 Cec07g0622 Cco07g0597 Clacu07g0576 Cmu07g0611 Cre07g0943 . . Cone6ag0358 Cone9ag0388 Lsi04g01097 . . . . . . Bda11g00188 . . . Bma06g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008842 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34