Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3001 ATGGCGGAGATTTCTGGCGATGGAGGAGGTGGGGTTTTGCCGGAGGTTTCTAATGGACGGACGGTGGATTCTCAGGCTACGCCGACGCCGTTGACGGTCTCCGGATCTTTCAAGGAGGGGAAAAGCTCGTCGCGTCGCCGGACGTCGGTCAGGCCGAGTATGGACGCCGACGACTTCTTCAACTTGTTGCACGGCTCGGATCCGGTGAAGGTGGAGCTCAATCGACTCGAGAATGAAGTGCGAGATAAGGATAGAGAGCTTGGGGAAGCTCAGGCGAAGATCAAGGCTTTGAAGTTGTCTGAGCGGCTAAGAGAGAAGGCAGTTGAAGAGCTGACTGAAGAACTATCAAAGGCTGATGAGAAATTGAAGTTGACTGAATCTCTTCTTGAAAGCAAGAATCTTGAAATAAAGAAAATCAATGATGAGAAGAAGGCTTCAATGGCAGCTCAATTTGCCGCTGAAGCCACTCTTAGGAGGGTACATGCTGCCCAAAAGGATGATGACATGCCTCCAATCGAAGCCATCCTTGCACCTTTGGAGGCTGAGCTAAAGCTTGCACGACAGGAGATTGCTAAGCTTCAAGATGACAATAAAGCACTGGATCGTCTAACCAAATCAAAGGAAGCTGCTTTGATCGATGCTGAGAGAACTGTTCAAAGTGCCTTGGCGAAGGCCTCTATGGTGGATGATTTACAGAATAAAAATCAGGAGTTAATGAAACAGATAGAGATTTGCCAGGAAGAAAACAAAATCTTGGACAAGATGCACAGACAGAAAGTTGCAGAGGTTGAAAAATTAACGCAAACTGTGAGGGAGCTGGAGGAGGCTGTTCTTGCTGGCGGTGCAGCTGCTAATGCCGTGAGGGATTATCAACGCAAAGTTCAGGAGATGAATGAGGAAAGGAAAACCCTTGACAGAGAGTTAGCTCGTGCAAAGGTAACAGCCAACAGGGTGGCTGTAGTAGTAGCAAATGAATGGAAAGATGCCAATGACAAGGTTATGCCAGTAAAACAATGGCTGGAAGAACGAAGGTTTTTGCAGGGAGACATGCAGCAACTTCGTGATAAACTTGCTATATCTGAGCGAGCTGCGAAGTCTGAAGCGCAATTGAAGGAGAAGTATCAACTGCGACTTAGAGTGCTTGAAGAGAGTTTGAGAGGGTCATCTGGTAGTTACAATCGAAGTACTCCAGAGGGGAGAAGTGTAAGCAATGGAACCTCTCGTAGGCAGTCTCTGGGTGGAGTTGATAATATCTCGAAATTATCTTCCAATGGATTTTTATCTAAAAGGATACCAGGTTCTCAGTTTAGATCTTTGAACTCAAGCAGTAGCACAGTGTTGAAACATGCAAAAGGAACGTCAAAATCATTTGATGGAGGCACAAGGTCTTTGGACAGAGGAAAGGTGTCATTAAATGGACTTCTACCCAGTTATCCATTCAATCAGTCCTGTGATGCAAGCAAGGACAGTGAAGTAAATAATGACTGGAAAAGTAATCCTGACGAAAAGGGAAATGAGTCTCCAACACTTGAGACTGAAGACAGTGTTTCAGGCATGTTGTATGATTTACTTCAAAAGGAGGTTATAGCATTGAGAAAAGCTGGTCATGAGAAAGATCAGAGCCTTAAAGACAAGGATGATGCCATTGAGATGCTAGCGAAGAAAGTAGACACACTGACCAAAGCAATGGAGGTTGAGGCAAAGAAGATGAGAAGGGAAGTAGCTGCCATGGAGAAGGAGGTAGCAGCTATGCGTGTAGAGAAAGAGCAGGAGAACAGGGCCAAGCGATTTGGTGGTAGCACCAAGGGCCCCGTTAGTGCAGCAGCACTGCTTCCCGGAAGAAGCATTGGGCGGGGTGGGTTGAATCGCAGCACTCAATGA 1881 46.52 MAEISGDGGGGVLPEVSNGRTVDSQATPTPLTVSGSFKEGKSSSRRRTSVRPSMDADDFFNLLHGSDPVKVELNRLENEVRDKDRELGEAQAKIKALKLSERLREKAVEELTEELSKADEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALIDAERTVQSALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDKVMPVKQWLEERRFLQGDMQQLRDKLAISERAAKSEAQLKEKYQLRLRVLEESLRGSSGSYNRSTPEGRSVSNGTSRRQSLGGVDNISKLSSNGFLSKRIPGSQFRSLNSSSSTVLKHAKGTSKSFDGGTRSLDRGKVSLNGLLPSYPFNQSCDASKDSEVNNDWKSNPDEKGNESPTLETEDSVSGMLYDLLQKEVIALRKAGHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMRVEKEQENRAKRFGGSTKGPVSAAALLPGRSIGRGGLNRSTQ 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41265501 41271578 + Sed0004797.1 Sed04g3001 711604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3001 626 MobiDBLite consensus disorder prediction 490 509 - -
Sed04g3001 626 Pfam Microtubule-associated protein 70 57 607 IPR009768 GO:0007010(InterPro)|GO:0008017(InterPro)
Sed04g3001 626 MobiDBLite consensus disorder prediction 437 463 - -
Sed04g3001 626 Coils Coil 73 100 - -
Sed04g3001 626 Coils Coil 108 142 - -
Sed04g3001 626 Coils Coil 228 276 - -
Sed04g3001 626 Coils Coil 336 363 - -
Sed04g3001 626 MobiDBLite consensus disorder prediction 18 39 - -
Sed04g3001 626 Coils Coil 176 203 - -
Sed04g3001 626 PANTHER MICROTUBULE-ASSOCIATED PROTEIN 70-2 48 598 IPR009768 GO:0007010(InterPro)|GO:0008017(InterPro)
Sed04g3001 626 MobiDBLite consensus disorder prediction 482 514 - -
Sed04g3001 626 MobiDBLite consensus disorder prediction 387 416 - -
Sed04g3001 626 MobiDBLite consensus disorder prediction 437 460 - -
Sed04g3001 626 Coils Coil 560 594 - -
Sed04g3001 626 Coils Coil 287 314 - -
Sed04g3001 626 MobiDBLite consensus disorder prediction 1 57 - -
Sed04g3001 626 MobiDBLite consensus disorder prediction 591 626 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3001 K27854 - - csv:101212718 1079.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2159 Sed-Chr3:15754485 Sed04g3001 Sed-Chr4:41265501 4.10E-157 dispersed
Sed03g2160 Sed-Chr3:15754485 Sed04g3001 Sed-Chr4:41265501 1.30E-119 dispersed
Sed04g0295 Sed-Chr4:2185313 Sed04g3001 Sed-Chr4:41265501 1.40E-271 dispersed
Sed04g0296 Sed-Chr4:2186008 Sed04g3001 Sed-Chr4:41265501 8.30E-283 dispersed
Sed04g3001 Sed-Chr4:41265501 Sed10g0557 Sed-Chr10:3588947 2.30E-107 dispersed
Sed04g0294 Sed-Chr4:2185313 Sed04g3001 Sed-Chr4:41265501 7.10E-290 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g500 . . . . . Bpe10g01001 Bma14g01927 Bma15g00026 Cmo04g01102 . Cma04g01029 Cma04g00077 Car04g00961 Car04g00073 Sed04g3001 . . Bhi07g00400 Tan04g1510 Cmetu10g0919 Lac13g1329 Hepe01g0590 . . Cla07g00538 Cam07g0579 Cec07g0638 Cco07g0604 Clacu07g0582 Cmu07g0618 Cre07g0954 . Cone19ag0733 Cone6ag0360 Cone9ag0390 Lsi04g01101 . . . Blo06g01031 . Bda07g01745 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01255 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000868 2 2 0 4 3 3 5 3 3 2 2 2 5 1 2 6 3 6 5 3 2 1 2 3 3 2 2 6 2 2 87